Labeo rohita (rohu): 127163097
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Entry
127163097 CDS
T09007
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lroh01001
]
127163097 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lroh04054
]
127163097 (ciita)
Enzymes [BR:
lroh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127163097 (ciita)
Protein kinases [BR:
lroh01001
]
Serine/threonine kinases: Other
TAF1 family
127163097 (ciita)
Pattern recognition receptors [BR:
lroh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127163097 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
nSTAND_NTPase5
LRR_8
AAA
Pox_A32
nSTAND3
NB-ARC
TsaE
AAA_16
ABC_tran
Roc
AAA_24
Motif
Other DBs
NCBI-GeneID:
127163097
NCBI-ProteinID:
XP_050962092
LinkDB
All DBs
Position
3:23195840..23213748
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AA seq
1158 aa
AA seq
DB search
MTGSRGCCAVMVPFEEVLFQVRKALQVSPILLHELLRELHEANVFSTQYYRSLYKDGEIG
EHCLFEDFCNDGEDLARRLSLPIWQNWDISQGILDLALSKEEVLALSKEDDLVPSNAESQ
DNVPDPMSELLPDSVLLEYLESFEDDFDPNFFDNFSVDTDTTFTPIPENASVLNEVENNK
RKADSDKRRRPKRKRATPPCPESPSANGRSPTITPDSSFHLSSSPFQHVLRIPFSPPLLP
SSGGSPLQFIQTISPLTPPLIGTVVPTGPTYVIVSPQCVSPGTQIIPLSPADGTVAPLEL
TGSMLPVGSSSDSAFPGLQSVDTPSPTKGSPQKNNDSTLSKTERKTRPEAPECVKDYINH
MKSHMSDVCCSMRGGMGMESHYVDMHLVQRKLLIKSGKNANKCLEKELVVLSDSERRKAK
LDRSQLFHNSDSKPKQSVALLGKAGVGKTTFIQRLCLDWASGSLPQFQFVFLLNCKILDL
TQSNYSLKALLFDLSVSPRCEDTDSVFKHILSCPDEVLIIFDSFDHIKDFEGLLQSPAKS
HTNTKYTVKQLFSGLFQKEILSGCTLLIATRPKDVLNQVLRKMDSLLELCGFCPEDIELY
TSKYFRDASLQENALKQIRNHRYISSLCSNPLLCWTTCFLLEQQDGCSDDLPSTFTDLCQ
RVTSKHLQEASLGISSLGKNSKQLDIPQLCKIAWEGFKNHDTRVNPGSSTELLDCCLKSG
ILTSYKISEHQENHFADLFTQNLLSAVHLVQSKQVNEKMVVANSVVHQKKRKIQGESQDV
LQRFVTGLIFQKPPDGLSILDSSINIKAKRKAVETHLESMKPNDLVPARLLELFHCVYET
CSAKFAKLLLKNLPEHLSFCGTQLCPSDVYVICHLLQHASGLKRTFCINLQDTCIPISGL
KELVGLKCIKSFWAHTADTIGLWEDLHQSNDELNLKSAIEKFTLEPFKATQGYHVESLPV
LVQIHREKKLPISESVSALDEGVPALRHLKRVEFELGVQNGPELFPKLVEVLPSLQSLQH
LDLEKNQIGDSGAEKLAGVLHFLECLKLLNLSQNHIGDAGVEKLAKALPSVPSLQSLSLY
GNAIADSGAEHLALVLPNMNLLQDLDVKFNKFTDIGATKLSAALKNCTGMKSLELWNDCI
PYGVFEHLRLQDSRIRSL
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggtctcgcggctgctgtgcagtcatggttccatttgaggaggtactgtttcaa
gtgagaaaagctttacaggttagccctatcctgctgcacgagcttctcagagaactgcac
gaggccaacgtcttctctacccagtattaccggtctctctacaaggatggtgaaatcgga
gagcattgtttatttgaagacttctgtaatgatggagaagatctggctagaagactctct
ttgccgatctggcaaaattgggacatcagccaaggcatcctggatttggcactctccaaa
gaggaggttttggcactctcaaaagaggacgatttggttccttctaatgctgaatcgcaa
gataacgtcccagacccaatgtctgaacttttacctgacagtgtcctcttggagtatctg
gagtcttttgaagatgatttcgatcccaacttcttcgataacttttcggttgacacagac
acaactttcacgccaataccagaaaatgcttctgtcctaaatgaagtggaaaacaataag
cgaaaagctgattcagataaacgccgaagaccgaaacgcaaacgagcaacaccaccatgc
cctgaaagtccctcagcaaacggaagatcacccaccataacccctgacagtagtttccat
ctgagctcaagtccattccagcatgtactacgcattcccttcagcccccctcttctgccc
tctagtggtggttcaccactacaatttatccagacgatcagccctcttacgccacctctt
ataggcactgtggttccaacagggcctacgtatgtaattgtgtcgccccagtgtgtgagt
ccaggcactcagataattcctctttcacctgctgatggcacagttgccccgttagagctc
actggttccatgcttccagttggctcatcctcagacagcgcattcccgggtttgcaatct
gtagacactccctcccctacaaaaggaagcccacaaaaaaacaacgattccacactttca
aaaactgaaaggaaaacccgcccagaggcaccagaatgtgttaaggactacatcaatcac
atgaaatcccacatgagtgatgtctgctgctctatgcgtggaggcatgggaatggagtcc
cactatgtggatatgcatctggttcaaaggaaactccttatcaaatccggcaagaatgca
aacaagtgtttggagaaagaactggtcgtccttagtgattcagagcgaaggaaagcgaag
ctggacagaagccagttgtttcataacagtgattccaaaccaaaacagtcagttgctctc
ctcggaaaagccggagtggggaaaaccacgttcattcagcgtttatgcttggactgggca
agtggcagcctgcctcaatttcagtttgtttttttgttgaactgtaaaattttagacctc
acccaatctaactacagcttgaaagctttactgttcgatttgtccgtgtctcctcgctgc
gaggacacagactctgtgttcaaacatattctgtcttgtcccgatgaagttctcattatc
tttgacagctttgatcacatcaaagactttgaggggcttctccagtcccctgctaaatca
cacacaaacactaaatacaccgtcaaacagctattttcaggtttgttccaaaaggaaatc
ctctcaggctgcacgcttctcattgccacgagacctaaagacgttttaaatcaggtgctt
cgaaaaatggacagccttttggagctttgcggcttctgtcctgaggacattgagttgtat
acgtcaaaatatttcagggatgcttccctccaagaaaatgcactaaaacagattaggaat
cacaggtacatatccagtttatgctccaacccgctgctttgctggactacctgcttcctg
ctcgagcagcaagacggctgcagtgatgatttgccttcaactttcacggacttgtgccaa
agagtgacctccaagcatctgcaagaggctagccttggaattagctcattgggtaaaaac
agtaaacagctagacatcccacagctgtgcaaaattgcatgggagggattcaagaatcat
gatacacgcgtaaacccaggcagttctacagaattgctggactgttgtcttaaaagtggc
atactaacgtcctacaaaatatctgagcatcaggaaaatcattttgcggaccttttcact
cagaatctcctgagcgctgtgcacctggtacagtcgaaacaggtgaacgaaaaaatggtg
gtggcaaacagcgtagtccatcagaagaaacgaaagattcagggagagtcgcaggacgtg
ctgcagaggtttgtcacgggcttgatcttccagaagcctcctgatgggctcagcatcctg
gacagcagcatcaacataaaagccaaaagaaaggctgtcgaaacccatctggagagcatg
aagcctaatgatttggttcctgccaggttactagaactgtttcattgtgtgtacgagacc
tgcagtgccaaatttgccaaacttctgttgaagaacctgcctgagcatctgtcgttctgt
gggacgcaactttgcccgtcagacgtgtacgtcatatgccatctccttcagcatgccagc
ggattgaagcggaccttctgcatcaacctgcaagatacatgcattcccatcagtggcctg
aaagagcttgtgggactcaaatgtatcaaatcattctgggcacatacagctgacactatt
ggcttatgggaggacttgcatcaaagcaatgatgaactgaacctgaaaagtgccattgag
aagttcaccttggagccattcaaggcaacacaagggtatcacgtagagagcctgcccgtc
cttgtccaaattcacagagagaagaagttaccaataagtgaatctgtgtctgcgctggat
gaaggtgtaccagcccttcggcatcttaagagagtggaatttgagcttggagtgcaaaac
ggtcctgaacttttccccaaactcgtagaggttctgccttctctgcagtctctccagcat
ctagaccttgagaaaaaccaaataggagactctggagctgagaagcttgctggcgtttta
catttcctggaatgtctgaaattgctaaatctgtctcagaaccacattggagatgccgga
gtggaaaaactggctaaagctttgccatcagtcccttctctacagagcctcagtctctat
ggaaatgcaattgctgacagtggagccgaacatcttgctttggttttaccaaacatgaac
ctcctacaggatctggatgtaaaattcaacaagttcacagacattggagctacaaagctc
agcgctgctctgaaaaactgcacaggaatgaagtctctggagctttggaatgactgcatt
ccatatggagtttttgaacacctccgtcttcaagattcacggataagatcactttaa
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