Labeo rohita (rohu): 127163218
Help
Entry
127163218 CDS
T09007
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127163218 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127163218 (vps8)
Membrane trafficking [BR:
lroh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127163218 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
Beta-prop_WDR36-Utp21_1st
Clathrin
TPR_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Beta-prop_WDR5
zf-RING_UBOX
zf-RING_11
Beta-prop_WDR3_1st
Beta-prop_THOC3
WDR55
PHD_4
ANAPC4_WD40
Beta-prop_HPS5
EIF3I
Beta-prop_EML_2
zf-C3HC4
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
127163218
NCBI-ProteinID:
XP_050962296
LinkDB
All DBs
Position
1:complement(29505903..29659848)
Genome browser
AA seq
1415 aa
AA seq
DB search
MAESPDSRSLVSASSQLNLMEIEAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRRRKAVETNTTVHGSVLRRNVLKGISAQIV
SAADKVDAGLPTAITVSNVIAVGTSHGLALVFDQNQALRLCLGTTATGAEYGAVSALSIN
HDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDHPALAVCNDSGGSV
FELSFRRVMGMRTCESRCLFSGSKGEVCCVEPLHAGPELKDHPITHYSLLAMASLTKILL
IGLKPSLKVWMTFPYGKTDPASVPLLAWQFVAVQKTINPVLAFCRGDTIHFLLVKKDESG
TIHVIKQRQLQLNCDLISLSWINPRTLVLMDSTEKLRVVDRPSQEELETVDMAELQLVYN
SSHFKSLATGGNVSQALALVGEKTCYQSVCSYAGQIMYLGTKSVHIMTLRNWRERVDHLL
KQEKFMEALSLAWSFHEGTAKAVLGLFADPAKRKGVVADKMVEILLQYVDRSLKKCPEQG
KIQVMEQHFQDMVPVMVDYCLLLQRTDLLFNQIYPRLVENSVARGVFLESLEPYILSERI
GCLTAPVMRDLLSYFQENGMMDSVEGCLVHMDITNLDIQQVCTVVQMCWDNQLYDAMIYV
FNSGMNDYISPMEKLFQAIAPPLHEGKPLTDEHVVMGNKLLVYISCCLAGRAYPLGDIPE
DLVPQVKNQVFEFLIRLHSVEAAQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQA
LEYQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCS
PDDDSRHTERQQVLLELLQVGGVVQFDEGRLLDLAEKAEFYQICEFMYDKKHLYDKIVDC
YLKDPLRKEELFNYIHNILSMPGYSSEEKQLVWVKALQHIKDLVSINSAKTAELVAVHFA
DKVQSIITSLQDDYLVFQFLKCLLNPSSRESLNPQTVLKLGPDLHELLVDLLCQFSPQQV
TAFLKTSQDYRLEEAIQITEKHKLHEATAYLLEKKGDVQGAFEVLLQTLKGKLHKLALEG
SEADKPDGEEEETGDEVPSLLQRVEEALHDIIALCQRSSHGLNQQQREALWFPLLEAMMS
PQKLLKGADSKHTSEALKELTMKVLNSMSSFIAPPAIIQRILQDPVYGKGKLAEIQGLIL
GMLETFNYEQTLLETTTNLLNSDLHWSLSHLRKAVSRGLHPRQDHCNICLQQYKRRQESE
EEIIIFSCGHLYHCQCLQRKEAGVLSERQYSWSCYKCTSNQGSRPADRPSAESSRSRSTS
LAQTKVMSTHRGIVAEALGRKILTEATLDAQQTQAWDHFRTLYRGPSRLAVLTELTYSHG
NERAGLSNPVHPGTGSIYHSENFQLKLSPPPLVEE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatcaccggacagtcgcagtcttgtttctgcgtcctcgcagctcaatttaatg
gaaatagaggcgattgatgataaagagtttgacatccctcaagtggacacacctccgacc
ctagaaagcatcctgaatgagcctgaagatgaggatgagccattcattctggaggacacg
tgtcttttgaacacagagaacattgatgcccactcgtgtgagacctcatctctggccagc
tctgacagtggagaccgcacacacttaaagaggaggaggaaagcagtagaaactaatact
acagtacatggatctgttcttagacgaaatgtgctgaaaggcatctcagctcagatagta
tctgctgcggataaagttgatgctggtttgccaacagcaataactgtttcaaatgtgatt
gctgtaggaacgtcacatggtctggccttagtatttgatcagaaccaggctctgcgtctc
tgtctggggaccacagcaacaggagcggagtatggggcagtgtcagctctcagtattaat
cacgattgcacacgactgctgtgtggctttgccaaaggacagatcacaatgtgggatctg
gccaatgggaagctgctccgcactattactgatgcccatccacccggcactgccatacta
cacgtgaagttcacagatcacccagcgctagctgtgtgtaatgacagtggcggatcagtg
tttgagctatcatttaggagggtaatggggatgaggacatgtgaatccaggtgtttattc
agtggttctaaaggtgaggtctgctgtgttgagcctctacatgctggacctgaactgaaa
gatcatcctattacccactactccctgctggccatggcctcactcaccaagattctgctg
ataggactaaagccttcactcaaagtgtggatgacttttccctacggcaagacggatcct
gcgagcgttcccttgttggcttggcagtttgtggcagtacagaaaacaatcaaccctgtt
ctggccttctgtagaggagacaccatccacttcctgctggttaaaaaagatgagtctggc
accatccatgtcatcaaacagcgacagcttcaactcaactgtgacctcatcagtctgagc
tggataaacccccgtacacttgtattaatggacagcacagagaagctgcgagtggtggac
aggcccagtcaggaggaactggaaacagtggatatggccgagctgcagctggtttataac
agcagccattttaaatccctcgctaccggtggaaatgtcagccaagcactggctttagtt
ggagagaagacatgttaccagtctgtttgcagctatgcaggccagattatgtatctgggg
acaaagtctgtgcacatcatgaccttgaggaactggcgtgagcgtgtggaccatctgttg
aagcaggagaagttcatggaggctctgtctctcgcatggtctttccacgagggcaccgcc
aaagctgtgctaggtctatttgcagatcctgctaagagaaaaggtgtggttgcagataag
atggtggaaattttgttacagtatgtggatcgctctctgaaaaaatgtccagagcaaggg
aaaatccaggtgatggagcagcacttccaggacatggttcctgtcatggtggattattgt
ctccttctacagagaacggacttgctatttaaccagatctaccctcgactggttgagaac
tcagtggccaggggtgtgtttctggagagtctggagccttacattctgagcgagcggatt
ggctgtctgactgctcccgtcatgagagacctcctcagctatttccaggaaaatggcatg
atggatagtgtggagggatgcctggtccacatggacatcaccaatctggacatacaacag
gtgtgcactgtggtgcagatgtgctgggataaccagctgtatgatgccatgatctacgtc
ttcaacagtgggatgaatgactacatcagcccaatggagaaactctttcaggcaattgct
cctccgctccatgaaggaaaacccctcacagatgagcatgttgtgatgggcaataaactg
ctggtgtacatcagctgttgtttggcaggacgggcctatccgttaggtgacattccggaa
gatctggtccctcaggtgaaaaaccaggtgtttgagtttctcattcgtctacactctgtg
gaggctgcacaagaagaggaagtgtatccctacatccgaactcttctgcatttcgacacc
cgtgagttcctcaacgtcctggcactgacatttgaggacttcaagaatgacaaacaggct
ctggagtatcagcaaaggattgtggacattttactgaaggttatggtggacaattctgac
ttcactccgtctcaggtcggctgtcttttcaccttcttggcacgacaacttgccaaacct
gataataccctctttgttaaccggaagctgtttgaccaggttctagagtttctgtgtagt
ccagatgatgactctagacatacagaaagacagcaggttctgctggagctgctgcaagtt
ggtggtgtggtccagtttgatgaggggcgtcttcttgaccttgcagagaaggcagaattt
tatcagatctgcgagtttatgtatgacaaaaagcacctttacgacaaaattgttgactgc
tacctgaaagaccccttgagaaaggaggagctcttcaactacatccataacatcctgtcc
atgccaggctacagctcagaggagaaacagttggtgtgggtcaaagcccttcagcacatc
aaggatctggtcagcattaactcagctaagacagcagagctagttgcagtgcactttgca
gacaaggtgcagtctatcatcacatctctgcaggacgactatttggtgttccagtttctg
aagtgcctcctgaaccccagctccagagaaagtctgaatcctcagactgtcctgaaactg
ggtccagatcttcatgagctcttagtggacctactgtgccagttcagtcctcagcaggtc
accgccttccttaaaacctctcaggactaccgactggaggaggccattcagatcacagag
aaacacaagctgcatgaggccacagcctacctgctggagaagaaaggagatgtgcaggga
gcttttgaagttctgctacagaccctgaagggcaaactccacaaacttgccttggaaggc
tcagaggcagacaagcccgacggtgaggaggaggagacaggtgatgaagtgccgagtctg
ttacaaagagtggaggaagctctgcatgacatcattgctttgtgtcagaggagttcgcac
ggtctcaaccagcagcaaagagaggctctgtggtttcctctcctcgaggcgatgatgtca
ccacagaaactactcaaaggtgccgacagtaaacacacctcagaagcattaaaagagctc
actatgaaagtcttaaacagcatgtccagttttatcgccccacctgccatcattcaacgc
atcctacaggaccctgtgtatggaaaaggaaagctggctgagattcaaggactgatttta
gggatgctagagaccttcaactatgaacagacgttgttggagacaaccacaaatctgttg
aattcagatcttcactggtctctgtcacacctgcgtaaagcagtcagtagagggcttcac
ccaagacaggaccactgcaacatctgcttacagcagtacaagaggcgtcaggagagcgag
gaggagatcattatcttcagctgtggacacctctaccactgccagtgtcttcagcgtaaa
gaagcgggtgttttgagcgagaggcagtattcatggagctgctacaaatgcacatccaac
cagggctcacggccagcggacagacccagcgcagaaagctctcgatcacgctctacttct
ctggcacagaccaaagtgatgtctactcatcgtgggattgtggcagaggctcttgggaga
aagatattgactgaagccactctggatgcccagcagacacaggcctgggatcatttccgt
actctctacagaggaccatctaggcttgctgttctgacagaactcacttactctcatggc
aatgagagggccggtctgtccaaccctgtccatccaggaacaggaagtatttatcacagc
gagaatttccagttaaagctttctcctccaccattggtggaggagtag
DBGET
integrated database retrieval system
