Labeo rohita (rohu): 127163360
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Entry
127163360 CDS
T09007
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127163360 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127163360 (xab2)
03041 Spliceosome [BR:
lroh03041
]
127163360 (xab2)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127163360 (xab2)
Spliceosome [BR:
lroh03041
]
Complex B
Other components
Prp19-related factors
127163360 (xab2)
Complex C
127163360 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
TPR_15
TPR_16
NRDE-2
ARM_TT21_C
ARM_TT21
PPR
ATG1-like_MIT2
TPR_1
Tcf25
DUF4515
Motif
Other DBs
NCBI-GeneID:
127163360
NCBI-ProteinID:
XP_050962515
LinkDB
All DBs
Position
3:6892941..6903290
Genome browser
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKPVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDDDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPDEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDGEPEEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgcttagcgggaaggcagacgttttattcgaagatgatgatttgccttatgaa
gaagaaatcatcaggaatccgtattcagtcaaatgctggatgcgttacattgagcacaaa
caaaatgctcagaaaccagtgctcaatatgatctatgaaagagctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagggagagacggaaacaggtgaaaggcaag
tgtgtcacagatccagcatatgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtgtctcagtgcaaa
attacacggagcagacggacgtttgatagggcgttaagagcgctgcccattacccagcat
cctcgcatctggcccctgtatcttcgctttgcccgtaacttgcctctcccagaaacagct
attcgtgtttaccgccggtacttaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcgattcgcctggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacttcactgaaagtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaaactctggtgttctatggctgattac
tatatccgcagtggacattttgagaaggctcgagatgtatatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggttttcgacagctatgcgcaatttgaggagagc
atgatcgctgccaagatggagaccacgtctgaactgggccaagatgaagacgatgacatt
gacttggagttacgattggcgcgttttgagttgctgataactcgacgaccgcttttacta
aacagtgtcttgctgcgtcagaaccctcacaatgttcacgagtggcacaaaagagtcaaa
ctctatgagggccagccaagacagatcataaacacatacacagaagctgtgcaaacgata
gatcctgtgaaagccacaggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgaaaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattatgaccaagctttgcgtatactaaggaaagcaacagcgattccagcaaga
aaagctgagtattttgattcatcagaaccggtgcagaatcgagtatataagtctctgaaa
gtgtggtccatgctcgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgacctccggatcgccacacctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaggacagttttaaggcatacgagcgtggcatt
gccctctttaagtggcctaatgtccacgacatctggaacacgtacctcaccaagttcatc
gaccgttatggaggcaagaagctggagagagcgcgagatctgtttgagcaagcgctggat
gggtgtcctgctaaatacgccaaaacgatctacttgctgtatgctaaactggaagaggag
tacggtctggcacgacatgccatggctgtgtatgagagagccactgccgctgtagagccg
gatgaacaacatcaaatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcttacgcttcgctgacatggagagcaaacttggggagattgacagagccaga
gccatctactcctactgctctcagatctgtgatccgagggtgaccgctcatttctggcaa
acgtggaaggagtttgagatacgccacggtaatgaggacaccatccgtgagatgctgagg
attaaacgcagtgtgcaggccacatacaacacacaagtcaacttcatgtcttctcagatg
ctcaaggcaaccactaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagctgctggagcagaaggctcaacagctcgctgcagaggctgagcag
gacaaacccaaacctaaagacaagatcctttttgtcaggagtgacacctcgcgcagtgaa
ctcgctgaactggccaagcaagctaatccagatgagatcgacattgatgatgatgaagat
gaggatgcagaagatggggaaccagaagaggtgcagttggagcagaagtctgtccctacg
gctgttttcggaggactaaaggatgactga
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