Labeo rohita (rohu): 127163398
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Entry
127163398 CDS
T09007
Symbol
atg4db
Name
(RefSeq) cysteine protease atg4da
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04136
Autophagy - other
lroh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127163398 (atg4db)
04136 Autophagy - other
127163398 (atg4db)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lroh01002
]
127163398 (atg4db)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127163398 (atg4db)
03029 Mitochondrial biogenesis [BR:
lroh03029
]
127163398 (atg4db)
Peptidases and inhibitors [BR:
lroh01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
127163398 (atg4db)
Membrane trafficking [BR:
lroh04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
127163398 (atg4db)
Mitochondrial biogenesis [BR:
lroh03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
127163398 (atg4db)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Peptidase_C78
Motif
Other DBs
NCBI-GeneID:
127163398
NCBI-ProteinID:
XP_050962569
LinkDB
All DBs
Position
3:39006517..39013707
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AA seq
467 aa
AA seq
DB search
MDVSDEFDCGMEPTDDLASFEVVNVSNLGLLDLSADDDGYVQETKDKTKLKTKLVSAWNN
VRYRGWSLKSKPRLSKRSPVCLLGQSYQLSYSGERESFRRAFSSLLWMTYRKGFLPLDGS
GLTSDAGWGCMLRSAQMLLAQGLMLHMMPAGWTWPATHHQTKDDLEVLDAHMLDDSLRES
QRDSGKPRRRSLETALECESHEEQTHRRIVSWFGDLPSAPFGLHRLVELGRASGKRAGDW
YGPAIAAHIFQNAVAASEVSDLAVYVAQDCTVYIGDVLKLCGTSRMDFSLRCRSGWKSLV
LLVPVRLGSDVLNPAYARCVKRLLELRCCMGIIGGKPKHSLFFVGFQDDQLIYLDPHYCQ
TAVDVQQDNFPLASFHCKTVRKMPFNRMDPSCTVGFYAGSRADFQTLCSDVTKALTSPEE
KYPIFTFVEGHKEEERSCTSDSVAYIKTKDKLGRIKKKSSVDEFVLL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgagtgatgagtttgactgtgggatggagcccacagatgacctcgcgtcattt
gaggtggtcaacgtgtcaaacctgggactgctggatctcagcgcggatgacgatggatat
gtccaggagacaaaggacaagaccaaactcaaaactaaactcgtttcagcgtggaataat
gtcagatatagaggttggtctttgaagagcaagccgcgtctcagtaagagaagtcctgtg
tgtctgctgggacagtcctatcagctgagttacagcggagagcgggagagtttccggcgg
gcgttctcctccctgctgtggatgacctataggaaaggtttcctgccgctggatggctcg
ggcctcacatctgacgcgggatggggctgcatgctccgcagtgcacagatgctgttagct
cagggactaatgctgcacatgatgcccgcaggttggacgtggcctgcaacgcatcatcag
accaaagatgacctggaggtgttagacgctcacatgctggacgactccctcagagagagc
cagcgtgactcgggaaaacctcgcagacgcagtctggaaaccgcgttagaatgcgagtct
cacgaggagcagactcaccggaggatcgtgtcctggttcggcgatctgccctccgccccg
ttcgggctgcaccggctagtggagttgggcagagcctctgggaagcgggcgggtgactgg
tacggaccagccatcgcggcccacatattccagaatgctgtggcagcgtctgaagtgtcc
gatctggcggtgtatgtggcgcaggactgcacagtgtacattggagacgtgttaaaactg
tgtgggacgtcccgtatggatttctcattgaggtgcaggtctggctggaagtcgctggtt
ctgctggttcctgtgcgtttggggtccgatgtgttgaatcctgcttacgcacgatgtgtc
aagaggttgctggagctgcggtgctgcatgggaatcattggagggaaacccaaacactcg
ctattctttgtgggattccaggatgatcagctgatctatttggatcctcattactgtcag
actgctgtagacgtccaacaagacaacttccctttagcgtcgtttcactgtaaaactgta
aggaagatgccatttaaccgcatggatccgagctgtacagtgggcttctacgccggcagc
agagcagatttccagactctgtgctcagacgtcactaaagctctgacatcccccgaagag
aagtaccccatcttcacatttgtggagggacataaggaggaggagaggagctgtacgtca
gactcagtcgcttatataaaaaccaaagacaaactaggcagaatcaaaaagaagagcagt
gtggatgaatttgtgctcctgtga
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