Labeo rohita (rohu): 127163440
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Entry
127163440 CDS
T09007
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5
KO
K21988
transmembrane channel-like protein
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
127163440 (tmc5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lroh02000
]
127163440 (tmc5)
03037 Cilium and associated proteins [BR:
lroh03037
]
127163440 (tmc5)
Transporters [BR:
lroh02000
]
Other transporters
Pores ion channels [TC:
1
]
127163440 (tmc5)
Cilium and associated proteins [BR:
lroh03037
]
Other cilia and associated proteins
Stereociliary proteins
127163440 (tmc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
IBIN
Motif
Other DBs
NCBI-GeneID:
127163440
NCBI-ProteinID:
XP_050962623
LinkDB
All DBs
Position
3:complement(23339800..23352288)
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AA seq
671 aa
AA seq
DB search
MRRMSVFPQHGAALGHLGLSANEIRQEVENNTSELVSDLVNQSARARFQAIRSLPMPFSE
RKIIRNRVNSVKQSKTIIPTNCGQQVSRSFRRFRAGLASARQYLIIWHDTLKDIGGRFGT
SVLSYFLFLKWLLKFNLFSLIINFCFITIPQIVHAPNISSVTGFRGLELLTGVGYFNQTV
LYYGGYNGEVIVSKPGYNMQLAYFFTIAAYLVLCGVSLIYSMSRSFQKNFVLDTGPVSGG
AWRLLCSWDFSVVNEKAIQYNKNNLAIQLKESLSERLQEKNKMDLSDRIKHLSLNVLAWL
LSLGLAVGCSAGIYFLGTDPELAFSFNHSPNDLTAEASTLLLPVVVSIINLIVPILYSLI
SKIESYSNPRAKIYISIVRNVILKMSILGILCFYWLDFVPSSVSCWESFVGQSVYRLLIF
DFIFCLIGIFYGEFLLNVIGTRCIQSLGVPEFDIARNVLDLIYAQTLAWIGIYFSPLLPV
MQVLKLFIIFYLKKISLSMNCQPPKHSGRAAQIQTVFIALLFFPSFVGALSMVAFTVWSL
KPSSECGPFQGLDTPFHTIFSWTASIQGPSETNWVWWIFENILRSELFYYLISLIILVIT
YFLWQITEGRKQLINTLRQQIVNEGKDKAFLLDKMQKLQKERREKASYRPQDYDQTPHFN
PNWMNTLPLDM
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggatgagtgtcttcccacagcatggcgcggctctgggacacctgggactttct
gccaacgaaatccggcaggaagttgaaaacaatacatctgaactggtatctgacctggtt
aaccagtcagcccgagccagattccaagccatacgatcattacctatgccattcagtgag
agaaaaataatcagaaacagagtgaactctgtcaaacaatcaaagaccatcatccccaca
aactgtggtcaacaggtgtctcggtctttccgcagatttcgtgctggcttggcatcagcc
aggcagtatttgattatatggcatgacactctgaaggatatcggcggcaggtttggcact
tctgtcctctcctatttcttgttccttaagtggctgctgaagttcaacctgttctccctc
atcatcaacttctgcttcatcacaatcccacaaatagtgcacgcacccaatatcagcagc
gtcacaggcttcagaggccttgagctcctcactggggtgggttatttcaaccagacggtc
ttgtactatggtggctataatggtgaagtgatcgtatccaaaccaggctacaacatgcag
ttggcctattttttcaccatagctgcatatctggtgctgtgtggggtgtctcttatctac
agcatgtccagatcctttcagaagaactttgtgctcgacacaggacctgtctctggagga
gcatggcgtctcctgtgcagctgggatttcagtgttgtcaatgagaaagccatacagtac
aacaagaacaatctcgccattcagctgaaggagtccttatcagaaaggttacaggagaaa
aacaaaatggatctgtctgacagaataaagcatctgtctctcaacgtactggcctggctg
ctctctttaggacttgccgtaggttgcagtgcaggcatctacttcctggggacagatcca
gaactggccttcagtttcaatcacagtccaaatgatttaacagcagaggcgtctactctt
cttctacctgtggtcgtgtcgatcatcaacctgatagtgcctattctttactctctcatt
agcaaaatagagagttactccaacccacgcgcaaagatctacatcagcattgtgagaaat
gttattttgaagatgtccattcttggaatcctttgcttttactggctggattttgttccc
agcagtgtctcatgttgggagtcctttgtggggcagagcgtgtatcgactgctgatattt
gacttcatattctgtctgattggcattttctatggggaatttctgctcaatgtaatcgga
accaggtgcatccagagtcttggcgtcccagagtttgacattgctaggaatgtacttgat
ctgatctatgctcagactctggcttggattggaatttacttctcccccctacttcctgta
atgcaagtcctaaaactgtttatcatcttttacctgaaaaagatcagtctgagtatgaac
tgtcagcctcccaaacacagtggcagagccgctcagattcaaaccgtcttcatcgccctg
ctcttcttcccttcgtttgtgggcgcgctatccatggtagcattcacagtgtggagtctg
aagccctcaagtgagtgtgggcccttccagggtctcgacacccccttccacaccattttc
agttggactgcttctattcagggcccctctgaaactaactgggtctggtggatatttgaa
aacatactgagaagtgaactcttctactacttgataagccttatcatcctagtcatcact
tattttctctggcaaatcactgagggacggaaacagctcatcaacactctgcgacagcag
attgtgaatgaaggaaaggacaaagcatttcttttggataaaatgcaaaaattacagaag
gaaagaagggaaaaggcatcttacagacctcaggactatgaccagacaccacatttcaac
ccaaactggatgaatacgctgcccttggatatgtga
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