Labeo rohita (rohu): 127163511
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Entry
127163511 CDS
T09007
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03030
DNA replication
lroh03410
Base excision repair
lroh03420
Nucleotide excision repair
lroh03430
Mismatch repair
lroh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127163511 (pold1)
03410 Base excision repair
127163511 (pold1)
03420 Nucleotide excision repair
127163511 (pold1)
03430 Mismatch repair
127163511 (pold1)
03440 Homologous recombination
127163511 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127163511 (pold1)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127163511 (pold1)
Enzymes [BR:
lroh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
127163511 (pold1)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
127163511 (pold1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
127163511 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
127163511 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_exo2
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
127163511
NCBI-ProteinID:
XP_050962718
LinkDB
All DBs
Position
3:24641007..24655406
Genome browser
AA seq
1105 aa
AA seq
DB search
MDFKRRNGGPAVGGASQAKKGKMNTEWEDSPSQFEEELALFDEMEMEVESGEGQAGHDVI
PVGDLFSADLNPRWKRPHAPPLQPNSDTLIFQQIDLDYYLGPPVAGMPGQVQGKVPIVRM
FGVTDSGNSVCCHIHGFAPYFYVPAPNGFTNAHLAEFQKELNSVVLKDMRSNKDNIAVTV
LAVDITKKESMYHYHGNKPHDFLRITMAMPRLIAPAKRLLEQGFKFGNFATQSYQAYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYRLREERSEGQTDSKYPGKVSLCQYEVDVAWNNLI
SHPAEGEWQRIAPLRVLSFDIECAGRKGVFPEPEIDPVIQIASMVQRQGEKEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFVRTVDPDIITGYNIQNFDLPYLLNRAATLKVN
LFPYLGRVRGIKSVLKDSSFQSKQMGRRENKTVNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVRTEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKNQVEKLGLAPEDFIKTPTGDLFVKSSVRKGLL
PEILENLLSARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESRYIISNGYQADAKVIYGDTDSVMVKLGVATVQEAMNLGK
EAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSNAEHHDKMDCKGIETVRRDN
CPLVANLINTCLQNILIDRDPDGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAG
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFAQKRSTCIGCR
AVLKTDAAVCDFCKKRESELYQKEIAHLSTLEEKFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQEKLISRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggattttaaaaggcgcaatggaggccctgcagtgggtggggcttcacaggctaagaag
gggaaaatgaacacagaatgggaggatagtccctcccagttcgaagaggaactcgctcta
tttgatgaaatggaaatggaggtggagtcaggggaggggcaagcaggtcatgatgtcatt
ccagtgggtgacttattctctgctgatcttaacccacgttggaaacgacctcatgcgcct
cctctacaaccaaactcagacacactaattttccagcagatagacctggattactacttg
ggacctccagtggcgggaatgcccggacaggtacagggcaaagtgcccatagtgcgtatg
ttcggtgtgacggacagtggaaatagcgtgtgctgccacattcatggattcgccccatat
ttctatgttcctgcccccaatggttttacaaatgcacacttggctgagtttcagaaagag
ctgaactctgttgtattgaaggatatgcgctccaataaagacaatatagcagtcactgtg
ctggcagtggacatcaccaagaaggaaagtatgtatcactaccatggaaacaaaccccat
gactttctgcgcattaccatggcaatgccacgtctgattgccccggcaaagcgtcttctt
gagcagggctttaaatttggcaacttcgccacccagagctaccaggcctatgaagccaac
attgactttgagatcaggttcatggtggacagtgatgtggtcggttgctgctggattgag
cttcctaaagggaagtacaggctgagggaggagagaagtgaaggacagacagattcaaaa
tatccaggaaaggtgtccctatgtcagtatgaggtggatgtggcatggaataacttgatc
agtcatccagctgagggagaatggcagaggatcgctccactcagagtcctaagctttgat
attgagtgtgctggcagaaaaggtgtgtttcccgaaccagagattgatcctgtgattcag
atcgcctcaatggtgcaacgtcagggagagaaggagccgtttatccggacggtctttacc
ttacagagctgtgccagtatagtgggctcccagattctctgctttactcaagagaaacag
ttactgcagagttgggctgagtttgtgaggacagtggatcctgacatcatcaccggctac
aatatccagaactttgaccttccgtacctcctcaacagagccgcaaccttaaaggtgaat
ttgttcccgtatctgggtcgtgtgcggggcattaaatcagtcctaaaggactccagcttc
cagagcaaacagatggggcgcagagagaacaaaactgtcaatatggaaggacgtgtgcag
tttgacctactacaggtgttgctgagggattataaactgcgctcttacaccctaaacgca
gtcagtttccattttctgcaggagcagaaggaagatgtgcagcattcgatcatcacagac
ctgcagaatgggaatgagcagacgcgtaggcgtttggctgtgtactgtctgaaggatgcg
tatctgcccctgcgcttgctgcagaagttaatgtgcgtcattaattacatggaaatggcc
agagttaccggggtgcccctgacctacctgctctctcgtgggcagcagattaaagtagtt
tcacagcttctgagacaggctatgaagcaggatctggtgatgccagtggtgcggacggag
ggtggggaggactacactggagccactgtcatagagccagagaaagggtattacagtgtt
cctatagcgaccctggatttttcctcactgtatccctccatcatgatggctcataattta
tgttacactacactcctgcagaaaaaccaggtggagaaactcggtctggctccagaagat
ttcatcaagacccccacaggtgatttgtttgtgaagagctctgtgaggaagggccttctt
cctgagatccttgaaaacctgctgagtgccaggaaaagggcaaaggcagagctgaagaaa
gagacagacccctttaaaaagcaggtgctggatggaaggcagttagctttgaaaatcagt
gcaaactccgtgtacggtttcaccggtgctcaggtgggcaagctgccctgtttggagatc
tcacagagcgtcacaggctttggtaggcagatgattgaacagaccaaacagcttgtggaa
tcaagatacataatctctaatggttaccaggcagatgcaaaggtcatctacggagacaca
gactctgtgatggtgaaactaggtgtggccacagtacaggaagcaatgaatctgggaaag
gaggcagccgaatgggtctcctcccacttcgttccaccaatcaaattagagtttgagaag
gtgtattacccgtatctgttgatcaataagaagaggtacgccgggttgtatttctcttct
aacgctgaacatcatgataagatggattgcaaaggaattgagaccgtcagacgagacaac
tgccctctagtggccaaccttatcaacacatgcctccaaaacatcctcattgacagagac
cctgatggagcagtagctcatgctaaagaggtgatctctgatctgctgtgcaaccgcatt
gacatcagtcagctggtcataactaaagagctcacacgcactgcacaggagtatgctggc
aaacaggcccacgttgagctggctgagaggatgcggaaacgtgatgccggtagcgctcca
aaccttggagatcgagtcccgtacgtcatcatcaaagcagcaaagggagtggcagcatat
atgaaatcagaggaccccatctatgtgctggaaaacaacatccccatagacacacagtac
tacctggagcagcagctgtccaaacctttactgcgcatctttgaacccatactgggcgag
agcaaagctgagagcgtgttgctgaagggcgatcacacacgctgtaagacggtcttgaca
tctagagtcggtggtctcatggctttcgctcagaaacgaagcacttgcattggctgccga
gctgtgcttaaaactgatgctgctgtatgtgacttctgcaaaaagagggagtctgagctt
tatcagaaagagatcgctcatctgtcgactctagaagagaaattctcacgtctgtggact
cagtgtcagcgctgtcaaggttcactgcatgaagatgtgctgtgtaccagtcgagactgc
cccatcttttacatgaggaagaaggtgcagaaggatttagatgatcaggaaaagctcatc
tctcgtttcggctggtga
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