Labeo rohita (rohu): 127163569
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Entry
127163569 CDS
T09007
Symbol
caskin1
Name
(RefSeq) caskin-1 isoform X1
KO
K21952
CASK-interacting protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127163569 (caskin1)
Membrane trafficking [BR:
lroh04131
]
Exocytosis
Calcium ion-dependent exocytosis
Kinases and associated proteins
127163569 (caskin1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Caskin-Pro-rich
Ank_5
SAM_2
Caskin1-CID
Ank_3
Caskin-tail
SH3_2
SH3_9
SH3_1
Motif
Other DBs
NCBI-GeneID:
127163569
NCBI-ProteinID:
XP_050962809
LinkDB
All DBs
Position
3:14414191..14521266
Genome browser
AA seq
1573 aa
AA seq
DB search
MGKDQELLQAVKTEDLMTVQKLLQRPKPGKAKLLGSAKKVNVNFQDTDGFSPLHHAALNG
NVEVISLLLESQAIVDIRDQKGMRPLHYAAWQGKSEPMKLLLKSGSSVNGQSDEGQIPLH
LAAQHGHYDVSEMLLQHQSNPCIVDNAGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPK
PGDSTDPNGTSPLHLAAKNGHIDIIRLLIQAGIDINRQTKAGTALHEAALCGKTDVVRLL
LDSGINATVRNTYSQTALDIVYQFTATQASREIKQMLRGKRRDASAALQVRALKDYCNNY
DLTSLNIKAGDVITVLEQHSDGRWKGCIHDNRTGNDRVGYFPSSIVEVISKRPGAAGKRG
QQAGSWSTVTCTQQYQKIQLCAPVCGPVSPAVAMVNGDSYHEIHILPPPPPPPPHSHLPL
FTSFGYNRSPNTSGEPHSGQEAKNDQDLASSRGSESSPHGSPTPAGGPQGGSSEEIWVLR
KPVAGGDRSSVGSSGSVASARSSGSGQSAGSSSILHAQAEGVKLLATVLSQSAKAKEHLL
EQTKSLDHPSHASSNKGPSSRSQSLSSCPLHEQPYGEAVSQRKGEALPEGKSSEAVIEWL
SEFQLQVYAPNFISAGYDIPTISRMTPEDLTAIGVTKPGHRKKITSEINKITVNEWLPDQ
KPATLGEWLSMIGLSQYHQVLVQNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVKK
LAEIQKASDGRNTLRKKPPAAQEVMAIESPPHDSGECMSPKMSTFQDSELSGELQAALTR
PADVQDGTEVRTNSSLGAQHRARSLHENSMNKSRDTEEPSGPPKKEARTMRQSSQGGQRS
VSLAQPKPRQSYPQGAGPPYTPPQTPTKTKPPTSQTVSNPPSKQKPSSQLHQQTEKPMTP
RAHPQSPTQRSHPHPAAQPVETKEAAPQGPAVSVPLLCLPPEGDEACDEYGLPKKRAHSL
NRYAVSDGEQERDELNVQESGGKYATVQHRVGRSNSMKGQADKNVNRSQSFALRQKKKGP
PPPPPKRSSSAISSSSSNLTEVPKETSSGPLLEVPYQPQRRASDLGGTVDTGSAGSVRSI
AAMLEMSSIGGGAKGLALQKSAGHYLQVGSAGAKQRDAIGLDGEVVNRRRTISGPVTELV
AAAKRGPQPEPVQDRQRNETQPSSSGSSAENLPFAEDGNLTIKQRPRQGKDESEEGLEMP
YSLPQEDPSRVDALLKRTVQSTKQQPNGTRFQLTESNTVKRRPKSKDKDTEEIQDGPMPV
PYENGTGTIKRRPASEVTVSEQPRPQEHPENSPRRDSADLEGHVTESAPRKSVKPPVSPK
PVLAQHIKKQGPPAAITKKAPFPGPTGAPGSPGTTQCGPFTCPVFTQLFEGKKVPPPISP
KPTPPPTAPKPSKNVLQSLNATPNPTPTPSPAKQTVTRMASTASAQNNHPVKATTPPALS
AQTPHTPQSPHTPQTPQTPQTPQTPQTPQTSGPTTPIPTPPPVKPPRSSISGVSMDSSTG
SAFVAGVVTVDAVHQKIEETSASLAAALQAVEEKIKEDAQKDSLAENKSTVSILDDIGSM
FDDLADQLDAMLE
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatcaggaattacttcaagcggtgaagactgaggacctgatgacggtgcag
aagctcctgcagaggcccaaacctgggaaagcaaagttgctgggctctgccaagaaggtg
aacgtcaacttccaggacactgatggattttcaccactgcaccatgcagctctcaatgga
aatgtggaggttatatcgctactactggagtctcaggccatagtggacatcagggaccag
aaagggatgcggcctctgcattatgcagcgtggcagggaaagtcggagcccatgaagttg
ctgcttaagtcgggttcctcagtgaacggtcagtctgacgagggtcagatccccctgcac
ctggctgctcagcacggacactatgacgtatctgagatgcttctgcagcaccagtcaaac
ccctgcatagtggacaatgctgggaaaaccccactggacttggcttgtgaattcggccga
gttggggtggtccagctgctactgagcagtaacatgtgtgcagctctgctggagcccaag
cccggagactcgactgatcccaacggcaccagcccgctgcatctcgctgccaagaacgga
cacatcgacatcatcagattgctgatccaggccggcattgacatcaacaggcagaccaaa
gcgggcactgccctccatgaggctgcgctgtgtgggaagactgatgtggtgcgcctcctg
ctggatagtggcattaatgcaacagtgaggaatacatacagccagacagcactggatatc
gtctaccagttcactgctacacaggccagccgggagatcaagcagatgctgcgaggtaag
agaagggatgcctcagcagccttgcaggtcagggcactgaaggactattgtaacaattac
gacctgacaagccttaacataaaggctggagatgttatcacggttctggagcaacattca
gatgggaggtggaagggctgcatccatgataaccgcacaggaaatgaccgagtgggctac
ttcccctccagcatcgtggaagtgatcagtaagaggcctggggctgcgggtaagagagga
caacaggcgggttcatggagtacagtcacttgtacccaacagtatcaaaagatacagctc
tgtgcgccggtgtgcggccctgtgtcgcccgccgttgccatggtgaatggggactcgtat
catgagattcatatcctgccgcctcctccacctccgccaccacattcccatctgccactt
ttcacttcctttggctataacaggtccccaaatacctcaggagagccgcacagtggacaa
gaggccaagaatgatcaagatttggctagttctcgcggctcagagtccagtccacatggc
tctcccaccccagccggtggtccccagggtggcagcagcgaggagatctgggtgctgcgc
aagcctgtggcaggtggagaccgcagcagtgtgggcagttcaggcagtgtggccagtgcc
cgatcctctggtagtggacagagtgcaggcagcagcagtatccttcatgcacaggcagag
ggagtcaagcttctggctacggttttgtcccagtctgccaaagctaaagaacacctgctg
gagcagaccaagtctttggaccacccctctcacgcttccagcaacaagggaccctcctca
cgcagtcagagtttgtcaagctgtccacttcacgagcagccgtatggggaggcggtgtcc
cagaggaaaggggaggcgctgcctgaggggaagagctcagaggctgttatcgaatggctg
agtgaatttcagctgcaggtctacgctccaaacttcatcagcgccggctatgacattcct
accattagccgaatgaccccagaggatttaacagctattggagtaaccaaaccaggacat
cgaaagaagataacctcagagatcaataagatcactgttaatgagtggctgcctgaccaa
aaaccagcgactcttggagagtggttatctatgattgggttgagtcagtatcaccaagtc
ttagtccaaaatggatacgagaacattgactttatcactgacatcacgtgggaggacctt
caggagattggcattacaaaacttggacaccagaagaagcttatgcttgcagtgaagaag
ctggcagagatccagaaggcctccgacggtcgcaacacattgcgtaaaaagcccccagcc
gctcaggaggtgatggctattgagagcccaccccatgacagtggagagtgtatgtccccg
aaaatgagcactttccaggacagtgaactgagcggggagttacaggctgctctcacacgc
cctgctgatgtgcaggatggcacagaagtgagaaccaacagcagcctgggagcacagcac
agagcacgcagtctgcatgagaacagcatgaacaagagccgagacacagaggagcctagt
gggccacccaaaaaggaggcacgtaccatgcggcagagcagccaagggggccagagaagc
gtctcgttggcacagccaaaaccgcgtcagtcttatccccaaggtgcagggccgccctat
actccaccacaaacgcccaccaagacaaagcctcccacctcacagacagtgagcaaccca
ccgagtaaacaaaaacctagttctcagctgcatcagcagaccgaaaagcccatgacacct
cgtgctcacccccagtcccccactcaaaggtcccatccacacccagctgcccagccggtg
gaaacgaaggaagctgcaccccaaggacctgctgtctcagtaccactcctgtgcctgcct
ccagaaggcgatgaagcttgtgatgagtatggtctgcctaagaaacgtgcccacagcctt
aatcgctatgctgtgtctgatggtgagcaggagcgggacgagctaaatgtgcaagagtca
ggaggaaagtatgccacagtacagcaccgggtgggtcgcagcaactcaatgaaagggcag
gcagacaaaaatgtcaaccgaagccagtcctttgcactcagacaaaagaagaagggtcct
cctccacctccccccaaacgctccagttcagccatctcaagctccagtagtaatctgact
gaagtgcccaaggagacaagcagtggacctcttctggaggttccctaccaaccacaaaga
cgtgcaagtgacctgggtggcactgtagacacgggcagcgccggtagtgtgaggagcatt
gcagccatgttggaaatgtcctccattggtgggggtgccaagggtctcgctttacagaaa
tctgcaggtcactatctacaggtgggttctgcaggagcaaagcaacgtgatgccattgga
ctggacggagaagtagtgaaccgtcgcaggactattagtgggcctgtcactgagttagta
gcagctgccaagcgaggaccacagccggagccagtccaggatagacaacgcaatgaaacc
cagccaagctctagtggaagctccgcagagaaccttccatttgctgaggatggaaacctc
accatcaagcaaagaccgagacagggcaaagatgagagtgaggagggactagaaatgcca
tactctttaccccaggaggacccttcacgtgtggatgccttgctgaaaaggacggtccag
agcaccaaacagcaaccaaatggcaccaggttccaactcacagagtcaaataccgtcaag
cgccgccccaagagcaaagacaaagatacagaggaaattcaggatgggccgatgcccgta
ccatatgagaacgggactggcaccattaaaaggcgccctgcatcagaggtgactgtttcg
gagcagcccaggccacaggaacatcctgagaactcgccccgtcgggacagtgcagacctg
gaaggccacgttaccgagagcgcccctcgtaagtccgtcaagcctccggtgtcccccaaa
cctgttctggcccagcacataaagaagcaaggaccaccggctgccatcaccaagaaagcc
ccgtttcctggaccaactggggcacctggcagcccaggtactacacagtgtggccctttc
acttgccctgtctttacacaattatttgaaggaaagaaagtacctcctccgatttctccg
aaacctacacctcctcccacagctcccaaaccatccaaaaatgttctgcagtctttaaat
gcgacacctaatcccactcccacgccctctccagccaagcagactgtcaccagaatggcc
agcacagcttctgcccagaacaaccaccctgtcaaggctacaacccctccagccttgagt
gcgcagaccccacacacaccacagtctcctcacaccccacagacacctcagacaccccaa
accccacagacaccccaaactccccagacatcaggtcccacaacccccatccccacgccc
ccacctgtgaagccccctcgctcctctatcagtggggtgtccatggacagttcaactgga
tcagcgtttgtcgcaggggtggtgacggtagatgcagtgcaccagaagatagaggagacc
agtgcctcactggctgcagccctgcaagcagtcgaagagaagatcaaggaggatgcgcaa
aaagactcattggctgaaaacaagagcacagtgagcatcctagacgacatcggcagcatg
ttcgatgacctggcggaccagctggatgccatgctggagtga
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integrated database retrieval system
