Labeo rohita (rohu): 127163608
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Entry
127163608 CDS
T09007
Symbol
tnrc18
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 18 protein
Organism
lroh
Labeo rohita (rohu)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAHCC1-like_Tudor
BAH
Tudor_3
Motif
Other DBs
NCBI-GeneID:
127163608
NCBI-ProteinID:
XP_050962869
LinkDB
All DBs
Position
3:complement(11596965..11675911)
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AA seq
2967 aa
AA seq
DB search
MMDGRDFGPPRSVHVPPPLLSGLPMESHRLGAAAAAGRMPQSPGHLGAGHPAALHTGKFL
SSAINLHSHHSDAFPGASSPFLGGYVSASGAHGSSDPAFRAPNPASLQMAQLWASHPHEG
FPHLPSSLYPSPYIPLGHLEHPQLSQHALFDSQKEGFYLPGSVHSQSAMARSPVAHMPSS
FSREKEALSSHKSSKDSSRDLGKEKPCKSDLGHSFPRKERERPKEESRPHSVVDLTLDVK
AEDERRVPERSMKTVEHTRPFSHQHSPALSTTDTKPKQSHQSLLGSCGMSSSMPTRHPST
EQDRRDRDRDRDRDDETSRPGGHLSSDKQKRCDSVATSAGTLHVSYASPSSLQPNPSHLP
PRLVSSGTYPPPHHMPPSMYPLYSTAKEPGKEHRVIAPTYVPSVEVYDERKGPIQIASQA
RDNKNDKSRERDSHRSALQVGNERTHMDHGRSSVRSESPPHGEVKKDILREEGSIIRSNG
LAMKKPLHLEMCSSKSGNSPDARDLSNTTSKHMIKTGLETESRSQERDRVQRSSHPFSGM
DPATLHSEQHSLKALGSAEPKWKPFEMGNYATSHMAALAAQHTHGPRSEEEGKRMYLDTT
GLHRPVGSGGSPKGHGEVSAMQSLIKYSGNFSSESSSRHGSDSRSPFGGLGSMKLEAGYP
GVSRVQHLPPQQSGKQLKKEPERPESAKSFGREGSSSQGEAEVRHPPVGIAVAVARQRDN
SSKPSSVSDRDRPILGGAIKGPIHTEEEQGDERTRHADERLLSGRVEREQEKVLRENKEL
ADYTQLHPPMVSASGLNPNLMVTGGPTLAGAGRWPADPASHLASHPWLPRPGAPSMWLSG
SPYGLGPPSLHQALPPGYPPALTGSIPPPYQFARDPQTGQVVVIPTEHLPHYAEMLERGP
PLWSAMYPPAGSSLQHAHQLQLLSHQQLLRQQELYMIQHQTAQVMELQRNAQLVERLNAS
QTRTDLDEKPDKRVAEGAKSSLSGIPTPALHSRKPHQRSPTPSTSYSKALTPLPVPPLPS
PVTALKSEDRPKVEKSLPQQPYSHPPSPVPHSVSPASASPPPASPIQTKEESVEVPEKEP
LSLQKQPSAPFPSMYREIPPGYPYQSITAPFGSHYPYLLQPAAAADADGLAPDVPLPAET
SEHLATAADVKPQHLCSPVVVEPLQASREPESLKEGGTVFKKEPNLEDRKDVLSQDSLRL
APITTQDSSGPTEAKAHPRETATPLPEEESDREDEEAVKIEAASSSHPGLYETSRLDSER
TTRVETTEPLIGLVDKVYKSSSSYTDTHHVVCDLQPAHPPPDLSDSLNPLDLRDPVPDAP
HLESKLDNPFLPGSSPPHLQPSSAPVAILPEDPMAGMFALVTASELPQAGAVSILADACS
SRSELCAGVSPLESTALEGMALLSQMAELEMQRQPRDDTEAVLLCGLESLLEAGRQVLLE
AIECQPQVIIRLPRELNPNKKYSWRQKKDEPMFSKSSLEGMDTVEVDYRVRLAELQQRYK
EKQRELVKLQRRREKEEKRQQQQQQQQQQQIQQHERNRSLARRGPGRPRKRKHGLCALSP
PSSKLDSKCSKLGRSVLYSEDSESGEVLRKRFRASNRDEEEEEDSVLRLKKKKKSWSEQE
ASSSFSHEAPKMAVKKSRVSEQEQLASKLDKALSLTKLSKLSKPSCKFIDGSSGKSRASS
GSRVSMLSDIDVRVKMGKSSLSKDLSIFHKSSKGGKSKMAAKTKPSDPCLKGKGQRKAPY
SPMRSEISSYSNNTDSEEDDSLKDGWPPSSMLGRTGSRPQLPGLCSTPSKKKRPSSKRAS
SSSSSSLKSKQAAKERKHKHFALLLQEAGVSSSEDSFDQEYFTERDDYEDDDDDEDEDGY
DFELDESDGLCSSSVEESGLGLLARFAASAIPSPIVTNPLSIVQLEAKQKAKKKEERQSL
LGTEFEFTDSESDVKXEKKFPSLLHGKRSAPELPHLPPASVMRDDSSPNKRGRKPKKPKS
PREFSFELTADGSEDEQWTRRRSERIFLHDAAQANPISPSSKTPLPLTPKPTRGPKPSPQ
SPKELAKGKEVKDPNKKKRIKETPLCLPPPQLSSTPSDSTGALPVSPGRKSKVKPKAREE
LGQNVLEFPQQARGKGGAVSKLMESMAADEDFEPNQDSSFSEDENPPVSAQPERPCTPAP
RNCVINKDELQDGLRVLIPMDDKLLYAGHVSTVHSPDIYSVVVEGERGNRPHIYCLEQLL
QEAIIDVKPPSVRYLPQGTRIAAYWSQQYRCLYPGTVVRGSPDMEDVDDLITVEFDDGDT
GRIPLSHIRLLPADYKIQCAEPSPALLVASTKRRGRKCSKDVPDGKETPPKNAEESAPKS
RGRGRKPKPKPEPEVAPKEHEKPDTPTPTQVPERPLSSQKSGPRPGRKIKQVGTASPSIP
VSNESQKKTTGIKPPAKVRSQPQSVYSPPLYGKVLSVDLYNEPSTSLASFISNNETASPA
GKGKPVKRLRKPEEEASGFSVKTQRKQPQTEILIKLDHEGVMSPKTKKTKALMMMEGQNL
SKRENKSVMGVSYTTISAADKTLKAKNKAAEADPPTTESVSTYSVRKLGSGSEGLMKVSN
SGEKDKKELECPNCSSSSSSSSESDGEEEQGASQEKKPKQDSTSSNSSRASSPTSSSSST
SSSSSSAGSHSSSSSSSSSTTSDEESSCSSDEEPVAVSQASPAAEHAPSQEEEEEDDDDE
DEKAKSKTGPAANIHKLQKQASATQQQQRHQQQKPQKQQKVKQGVGRPKRREGIHLPTTK
ELAKRQRLPSVENRPKISAFLPARQLWKWFGKPTQRRGMKGKAKKLFYKAIMRGKEMIRI
GDCAVFLSAGRPNLPFIGHIQSMWESWGNNMVVRVKWFYHPEETNPGKKLHDKKNWDQMS
GQSLPAVLQASNQRKDFMERALYQSSHIDENDVQTISHKCLVVSLEQYEQMIKTKKYQDS
EDLYYLAGTYEPTTGMIFNTDGVPVIC
NT seq
8904 nt
NT seq
+upstream
nt +downstream
nt
atgatggatggccgagacttcggaccccccagatctgttcacgtaccgccgccccttctc
tcggggctgcccatggagtcacaccgactcggcgcggccgctgcggccggtagaatgcca
cagtctcccggtcatctgggcgcggggcacccggcggctctacacactggaaaatttctc
tcatcggccataaaccttcattctcaccacagtgatgccttcccaggtgcctctagccca
ttcctcggcggatacgtcagcgcctccggtgctcacgggtcgtcagatccggccttccga
gccccaaacccagccagcctgcaaatggcccagctttgggcctctcaccctcatgaaggt
tttcctcatttgccaagcagtttgtaccccagcccttacattcccctgggccacctcgag
catccacagctcagccaacatgcactctttgactcacaaaaagaggggttttacctgcca
ggttcagtgcactcccagtctgcaatggccaggagcccggtggctcacatgcccagctct
ttctccagggaaaaggaggccctgtcttctcacaaaagctctaaagactcaagcagggat
ctgggaaaggagaagccctgtaagagtgacctaggccactccttcccaagaaaggaacga
gaaaggccaaaagaggagtcgcggccccacagtgtggtggacctcaccttggatgtcaag
gcggaagatgagcgtagagtcccggagaggtctatgaaaactgtggagcacactcggcct
ttctctcaccagcactcgcctgctctgagcaccacggacactaaacccaaacaatctcac
cagagtttacttggcagctgcgggatgagcagcagcatgccaacccgacaccctagtacg
gaacaggacaggagggacagggacagggacagggaccgggatgatgaaaccagccgacca
gggggccacctttcctctgacaagcagaaaagatgcgattcggttgctacatcagctggc
actctgcatgtgtcctatgccagtccctcttccctgcagcccaacccatcccatctcccg
cccaggctggtgtcctctggcacctaccctccccctcaccacatgccgcccagcatgtac
ccgctctactctacagcaaaagagccaggcaaagaacacagagtgatagctcctacttat
gtgccttctgtcgaggtttacgatgagcgaaaagggccaattcaaattgcctcccaagct
cgagataataaaaatgacaagagcagggagagggactcgcacagatcagccctgcaggtg
gggaatgagagaacacatatggaccacggtcggtcctccgttaggagcgagtctccccct
cacggggaagttaagaaagacattttacgagaggaaggctcgataattaggtcaaatggt
ttggccatgaaaaagcccttgcatttggaaatgtgctcaagtaaatctggaaacagccca
gatgccagggacttatccaacactacatcaaaacacatgataaaaacgggactcgagacc
gaatcccgcagccaagagcgggatagggttcaaaggtcctcccatccattttctggaatg
gatccagctacgcttcactcggaacagcattcgttgaaagctttgggttctgccgaaccc
aaatggaagcctttcgagatgggcaattacgctaccagtcacatggccgcattggcggcg
caacacacccatggccctcgaagtgaagaagagggcaagcgaatgtaccttgacactact
ggcctacatagaccggtaggcagcggcggaagccccaaggggcacggtgaggtttcggcc
atgcagagcctcatcaagtacagcggcaacttctccagcgagtctagctccaggcacgga
tctgatagccgtagtccgtttggaggacttggcagcatgaaactggaggctggttatccc
ggagtgtccagagtacagcaccttccgccccagcagtctggaaagcagttgaagaaagag
cctgagagacctgagagcgctaaatcctttggcagagaaggaagctcttctcagggagaa
gccgaggttcgtcatccaccggtaggcattgcggtggctgtcgcccgccagagggacaac
agcagcaagcctagctcggtttcggacagggacagaccaattcttggaggagccatcaaa
ggtccgatccacacggaggaagagcaaggagacgagaggacgcgtcatgccgacgagcgc
ctgctgtcgggacgtgtggagcgtgagcaggagaaagtgttaagagagaataaagagttg
gcagactacacccagttgcatccacctatggtgtctgctagtggactgaacccgaatcta
atggtgactggtggaccgactctggctggtgcgggccgctggcctgctgaccccgcctcc
caccttgcctcccacccgtggctgccccggccaggagccccctccatgtggctgtctggt
tctccatatggtctaggccccccttcccttcatcaggcgctgcctccaggatatcctcct
gccttgacgggctccatccccccaccttaccagtttgcccgagatccacaaaccgggcag
gtggttgttattccgacagagcatctgccacactatgctgagatgttagagcgaggcccc
ccgctgtggtcggccatgtacccgccggcaggaagctctctgcagcatgcccatcagctc
cagctcctctcccaccagcagctcctgcgccaacaggagctctacatgatccaacaccag
accgcacaggtcatggagctgcagaggaacgcacagttagtggagagattaaatgcaagt
caaacgaggaccgatttggatgagaagccagacaagagagtagctgaaggagcaaaatcc
agtctctcgggcattcccactccagccctgcactcacgcaagcctcaccaacgctcccca
accccctccacctcgtacagcaaagccttgacgccgctgcccgtcccaccgctgccttca
cctgtcactgcactgaagtctgaggacagacccaaagtggagaagtccctccctcaacag
ccctactcccatccgccgtcccctgtccctcactcagtcagccctgcttcggcatcgccc
cctcctgcctcccccatccagaccaaagaggagtctgtggaagtgcctgagaaagaacca
ctcagtctacagaagcaaccttctgctcccttcccatccatgtaccgtgaaattcctccc
ggctacccgtaccaatcgataacggcacctttcggcagccattacccctacctcctccag
ccggctgctgccgcagatgctgacggcttggctccagatgtgccgttgccggctgagacc
tccgagcacttggcaaccgccgcagatgtcaaaccccagcacttgtgttctccagtggtt
gtggagccactccaggcctccagagagccagagtccttgaaggagggcggcactgtgttc
aaaaaggagccaaacctggaagacaggaaagacgtcctgagccaggacagcttaaggctc
gcacccatcaccacccaagactctagcggacccacagaggccaaggcccaccctagagag
acagctacgcctttaccagaggaggaatcagaccgggaagatgaggaggctgtcaaaatc
gaagctgcctcctcaagccatccggggctgtatgaaacctctaggctggattctgagaga
accaccagagttgaaactacagaacccttgattggtctggtagacaaagtctacaaatcc
tcatctagttacacggacacgcaccatgtggtttgtgacctccaaccagcacatccgccc
ccagatctctctgatagcctgaacccgttagacctcagagatcctgtcccggatgctccg
cacctggagtccaaacttgacaatcctttcctgcctggcagcagccctccccaccttcag
ccctcttccgcaccggtggccatcctgcctgaagaccccatggcaggcatgttcgcccta
gtcacagccagcgagcttccgcaggccggagcggtgtccatcctggcagatgcgtgcagc
tctaggtctgagctctgcgcgggcgtcagtcccctagagtccaccgctctggaaggcatg
gccctgctcagccagatggcagagctggagatgcagaggcaacccagagatgatacagag
gctgtattgctctgtggactagagagtctgctggaagctggcaggcaggtcctcctggag
gccatcgagtgtcaacctcaggttatcatccgcctcccccgagagctcaaccctaataag
aaatacagctggagacagaagaaagatgaacctatgttctccaaatcctctttggaggga
atggacaccgtagaagtggactaccgtgtgagacttgccgaactgcagcagcgctacaaa
gaaaagcaacgagagctggtcaaactgcagaggcggagagaaaaagaagagaaacgtcag
cagcaacagcagcagcaacaacaacaacagatccagcagcatgagaggaacagaagttta
gcccgcaggggcccgggacgtccccgaaagaggaaacatggcctgtgcgcactgtctcca
ccctctagcaagctggattcgaagtgttcgaagttgggcagaagcgtgctttactcagag
gactctgagagcggggaggtgctgaggaagcgctttcgggcctctaacagagatgaggag
gaggaggaagatagtgtgttgaggttgaagaagaaaaaaaagagctggagtgagcaggag
gcatcttcaagcttctctcatgaggcacctaaaatggctgtgaagaagagccgagtgagc
gagcaggagcagttggcatccaaactcgacaaggccttgtccctcactaagctcagtaaa
ctcagcaagccctcttgtaagttcatagacggttcctcagggaagtccagggctagttct
ggaagcagagtctccatgcttagcgatatagacgtgagagtcaagatgggaaaatcctcc
ctgtcgaaagatctcagcatctttcacaagtcttccaaaggaggtaaaagcaaaatggct
gccaaaacgaagccttcagatccatgccttaagggaaaaggccagcggaaagcaccttat
tctccaatgaggtcagaaatcagcagctattctaataacactgattcagaagaggacgat
tccctgaaggacggctggcctcccagctccatgttagggagaacagggtcacgtccacag
ctccccggcctgtgcagcactccatccaagaaaaagcgcccgtcgtccaagagagcctct
tcatcttcgtcttcatcactcaagtccaagcaggcggccaaagagaggaaacataagcac
tttgctttattgctacaggaggcaggagtcagctcctctgaggactcatttgaccaagag
tattttaccgagcgggatgattatgaggatgacgatgacgacgaggatgaagatgggtat
gatttcgagcttgatgaaagtgatggcctgtgttcgtcatctgtagaagagagcggactt
ggtcttctggctcgctttgccgccagtgctatcccgagccccatcgtcaccaatccgctt
tccatcgtccagctggaggctaaacagaaagccaagaagaaagaagaacggcagagtctt
ctgggtacagagttcgagtttacagattctgagagtgatgtaaagnatgagaaaaagttt
ccgtctcttctgcatggcaaacggtcggctcctgagcttccgcacttgccgcccgcgagc
gtcatgcgtgacgactccagccccaacaagcgtggacgcaaacccaagaaacccaagtct
ccacgggagttcagttttgagcttaccgctgatgggagcgaagacgaacaatggacgcgg
aggaggagcgaacgcatctttcttcacgatgccgcccaagccaaccccatctccccgtcc
agcaaaactcctcttccactaactcccaaacctacccgtgggcccaaaccatccccgcag
agtcctaaggagctggcgaaaggcaaggaagtgaaagaccccaacaagaagaagaggatt
aaggagacccccctatgtctgcccccacctcagctctccagcacaccctcggacagcacc
ggagctctccctgtcagcccagggcgcaagagcaaggtgaagcccaaagccagagaggaa
ttggggcaaaatgtgcttgaattcccccagcaggctcgagggaagggcggtgctgtcagt
aaactgatggaaagtatggctgctgatgaggacttcgagcccaaccaggacagcagcttc
tccgaggacgagaatccccctgtgagcgctcagcccgaaaggccctgcacccccgcccct
cggaactgtgtcattaacaaagatgaactgcaggatgggttacgggtcctcatccctatg
gatgacaaactcctgtatgccggccacgtcagcacggttcactctcctgacatatacagt
gtggtggtggagggcgagagggggaacaggccacatatctactgcctggagcagctgcta
caggaggcgattattgatgtgaaacccccctccgtcagataccttccccaggggacccgg
atcgcagcctactggagccagcagtaccgttgcctctaccctggcacggtcgtcagaggg
agcccagacatggaagacgtggacgatttgattacagtggagtttgacgacggagacacc
ggacgaatcccgctctctcacattcggctgctgccggcggactacaagattcagtgtgct
gaaccgtcccctgccctccttgtggccagcaccaaaaggcgaggaaggaagtgcagtaag
gatgtacctgatggcaaagagacaccacctaaaaacgcagaagagtctgctccgaaaagc
aggggccgaggaagaaagcccaaacccaagcccgagcctgaagtcgctccaaaggagcat
gaaaagcccgacacaccaaccccgacgcaggtccccgagaggcccctgtccagccagaaa
agcggcccacggccaggtagaaaaattaagcaagtcggcacagccagcccctccatcccc
gtatctaatgaaagccagaagaaaaccacaggaatcaagcccccagccaaagtgcgttcc
cagccccagtctgtctactctccgccgctctatggaaaagttctgtctgtggatctctat
aatgagccctccacttctctggcctcctttatatccaacaatgagactgcgagtcccgcg
gggaaaggaaagccggtcaaacgcttgcgaaagcctgaggaggaggcatctgggttcagt
gtgaaaacacagcgcaagcaacctcagactgagatcctcatcaaactggaccatgaggga
gtcatgtcacccaaaaccaagaagaccaaagccctcatgatgatggaggggcaaaacctc
tccaaaagagagaataagtctgtcatgggtgtcagctacactacgatatccgctgctgac
aaaacactcaaagctaaaaacaaggcagctgaggcagacccgcctactaccgagagcgtg
tccacatacagcgttcgcaagctcggcagcggcagcgagggtctgatgaaggtgagcaac
tcaggggagaaagacaagaaagaactggagtgtcccaactgcagtagcagcagcagcagc
agctcggagtcagacggagaagaggaacaaggagcctcgcaggaaaagaagcccaaacaa
gactcgaccagctccaacagctcgcgggcatcgagtcccacctcttccagctcatccaca
agcagttcctcatcctcagctggttctcactcctcctcctcctcctcgtcatcctccacc
accagtgatgaagaatcctcctgtagctcagatgaagaaccagttgccgtttctcaagca
tccccagctgcagagcatgcaccatctcaagaggaggaggaggaggacgacgatgacgag
gacgagaaggccaagtcaaaaacggggcctgccgccaacatccataagctccagaagcaa
gcatctgccacgcagcagcaacagcggcaccagcagcagaagccccagaaacaacaaaaa
gtgaagcagggcgtcggtcgccccaaaagacgagagggaatccacctcccaactactaag
gagctggcaaaaagacagaggctaccctccgtcgagaacaggcccaagatctcagctttt
cttcctgccagacagctgtggaagtggtttggaaagcctactcagaggcgaggaatgaaa
gggaaggcgaagaagcttttctacaaagccataatgcgtgggaaggaaatgatccgtatt
ggagactgtgccgttttcctgtctgctggacgacccaacctccccttcattggacacatc
cagagcatgtgggagtcctggggaaacaacatggtggtccgtgtcaaatggttctatcat
cctgaggaaaccaaccctggaaagaaacttcatgacaaaaagaactgggatcaaatgtct
ggccaaagtcttcctgctgttctgcaggcttccaaccagagaaaagacttcatggagcgg
gccctgtaccagtcctcgcacatcgacgagaatgacgtccaaaccatttctcacaaatgc
ctggtggtcagccttgagcaatacgagcagatgattaaaaccaagaagtaccaagacagc
gaagacctctactacctggccggcacttacgaacccaccactggaatgatattcaacacc
gatggggttcccgtaatctgctga
DBGET
integrated database retrieval system
