Labeo rohita (rohu): 127163700
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Entry
127163700 CDS
T09007
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127163700 (pdzrn4)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127163700 (pdzrn4)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127163700 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
127163700
NCBI-ProteinID:
XP_050962993
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All DBs
Position
4:complement(34766345..34802302)
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AA seq
799 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKDPIVVQVLRRGPSARNQ
NSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIQTMEHEYFDC
PEYVASTQAEVDRALEFECEEIELCRMNSQEKLGLTLCYRTDDEEDTGIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNREDAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHQD
FLEELKMEILEEQKKEGILQTAGCVKRSKRHEDASASTDTATCSSTILEKDSGVKCSFED
SSEHELLSRPQTRTQKQLRDRWEAGSHLVPMDTVSLTRQEKGQEGRLSENGVECDHFQQL
LELKCQFRNSGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIERECQSIMQAH
QLRRSKHDSPRTDKESRLRRGKLADINEHPERLQSEKLRDKDSSSAYNTAESSRSTPLGT
EGSPDHSLQRRVHLTNQRNLRSTQHLQSPYSSPILSLPSQSSPTCSRAHTYTSSTPPLQT
PITSPGSQGPSQAFSSSLEQSPSNPSESDPALPADDERCEKERNRNRVATARHYHSPYHS
NTATTQPPSTRHYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSPPGRLEWKVKVRA
DGTRYVARRPARDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAR
EQRRRREFMQRSRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHG
ARAPEGTKVHNAFLSVTTV
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacctgtgcacgctgcagaagagagaggagcactacaagctgctatatgag
atcgcacaggtgaatgggcgtgaattttccaagtctggacatgagggaacggtggaggcc
atgcggaaggatcccatcgtggtgcaggtgttgaggcggggcccctcggcccggaaccag
aacagcttacaggaagtgtgtgtggtggacgtgtgcactcagacggacattacctttgag
cacatcatggctctggctaagatgagacccaccaccccacctgtgccagacatctgcccc
ttcctgctgtcggacagttgtcattctattcagactatggagcatgaatattttgattgt
ccagaatatgtggccagcactcaggcggaggtggacagggcacttgaattcgagtgtgag
gagattgagctctgtcgaatgaacagccaggagaagctgggtcttactctctgctaccgc
acggatgatgaggaagatacaggaatttttgttggtcaggtcgagctcaacagcatagct
gcaagggatggacgcatcagagagggagacagaattttacagataaatggtcatgacgtg
cagaacagggaagatgctgtcgctctcctctcaaatgaaaattctagatccatagtgtta
cttgtcaccagacctgaaggacagatggatgggagctggcttgatgaggaccatcaagat
ttcctggaggagctgaagatggagattttagaagagcagaaaaaggagggaattcttcaa
acagcaggttgcgtaaagcggtctaaaagacatgaagatgcctcagcaagtacagataca
gcaacatgttcctctaccattcttgaaaaggacagtggagttaaatgcagctttgaggac
agctctgaacacgaattgctctctcgtccccaaacacggactcaaaaacaacttcgggac
aggtgggaagcaggctcgcatttggttcctatggacaccgttagcttaaccaggcaggag
aagggtcaggagggcaggttgagtgagaatggagtggagtgtgaccatttccagcaactc
ctggagctcaaatgccagttccgtaacagtggagaatgcgggttggtctacaggcgaagc
agtactattgagtgcagcctgacggagcagggtggaagtggagtggcgcgggagctgcac
atgctcaacgaagagctgcgcagcattgaacgcgagtgccagagcatcatgcaagcacac
cagctgcgcaggagcaagcacgactctcctcgaacggataaggaaagtcgactgcgtcgt
ggcaagcttgcagatatcaacgagcatcctgagagactacaaagtgagaagctcagagat
aaagacagctctagtgcctacaatacagccgaaagttcccgctcaactccactgggaact
gaaggttcaccagatcactcactacaacgtcgagtccacctgaccaatcagaggaacctt
cggagtactcaacacttgcagagtccctacagtagtcccatcttgtctttacccagccaa
agtagccctacttgcagtcgtgcccatacatacaccagctccacaccacccttgcagacg
cccatcaccagtcctggttcacaaggaccaagccaggcgttctccagcagcttggagcaa
agccccagcaacccctcagaatcagacccagcacttccagcagatgatgagcgctgtgag
aaagaaagaaaccggaatagggttgcaaccgctcggcactaccattcgccctaccacagc
aacaccgcaacgactcagcctcccagcacacgacactaccagagttacctacagctccta
caacaacattcctcttcctccctggagtactcccagagccagcttagcctccttagcctc
cgtggacggcctggaccctcaccacctggccgacttgaatggaaggtcaaagtgcgagca
gatggaaccaggtacgtggcacgtcgacccgcacgagatcgcatcctgcgtgaacgagcc
ttacggatccgggaggaacgcagcggtgggatgactacagatgatgacgcagtcagcgag
ctgaagatgggacgatattggagtaaagaagaacgcaagcagcagctagcacgggccaga
gaacagcggcgcagaagggagttcatgcaaaggagccggcttgagtgcctcagggagacc
atggggacggcaagcggagaggtcagcatcctggagctcagccataagaagatgctgaag
aaacgaaacaagaagatccttgacaactggatgactattcaagagcttatgagccatgga
gcacgagcacccgagggcaccaaagttcacaacgccttcctttcagtcaccacggtttag
DBGET
integrated database retrieval system
