Labeo rohita (rohu): 127163760
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Entry
127163760 CDS
T09007
Symbol
ngs
Name
(RefSeq) notochord granular surface isoform X1
KO
K07610
desmin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127163760 (ngs)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lroh04812
]
127163760 (ngs)
Cytoskeleton proteins [BR:
lroh04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
127163760 (ngs)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF848
Cwp8_D3
DUF1664
DUF3450
DUF5382_C
Motif
Other DBs
NCBI-GeneID:
127163760
NCBI-ProteinID:
XP_050963074
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Position
4:complement(42267745..42274455)
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AA seq
521 aa
AA seq
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MSHSPERMSSYRRHFESGLSSSSTLQVRVSSPSPTRGAARHRSASYTRSGARRALSGSRK
SRMTSSVSMGTLCLGMGFGVAGGAVDLDAAAAENQAFLSTRTSEKKEMVALNDRLAVYIE
KVRSLEQSNKLLEAEIDGIKNHHVKPSGLRLLYEDQLRELRRIADQMKVQRDLAVAAKDA
MAGQLEMLKVKYEEALEARKKAELEIEAFKPDVDAATSARIALEKRLENLEVELEFLQRI
HKKEIEELMAQIYGSVAKVDVAFSLPDLASALKQIQAQYDSIAAQNLQEMDAWYKAKFQD
LNKATSRHVETARSVREEMTAYKREIQNKQRELEALKNRNEALLLQMREAQERYKKEEAE
LQIRIETLKEELKSIKGKIALLLRDYQDLLNVKMSLEIEITTYRKLIEGEDSRLSNMVSS
LSLMSVSAGMVSSISGAAAAARSQAISGAVSSSASEKMLSSSTIVDHNHHESVEEFTHEQ
AVEMTERKTVLIRTVRTDEDTFQRDTQERTITISGAADETD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacagcccagaaaggatgtcatcttaccgccgccacttcgagagtggcctgagc
tcttcttccacgcttcaggtgcgggtctcgagcccttcacccacccgtggagctgcgcgc
caccgctccgccagttacacccgcagcggggcacgcagggcgctttctggatcccgcaaa
tcacgcatgaccagcagtgtgagtatgggaacgctgtgtctgggcatgggttttggggtt
gccggcggtgcggtggatctggacgctgcagccgctgagaatcaggctttcctcagcaca
cgcaccagtgagaaaaaggagatggtcgccctcaatgaccgtcttgctgtgtacatcgag
aaggtgcgttctctggagcagagcaacaagctgctggaggcagaaattgatggcatcaag
aaccaccatgtgaagccgtccggtctgcgactgctctatgaggatcagttgagggaactg
aggaggatcgccgaccagatgaaagtccaacgggacctggcggtagcagcaaaggatgcc
atggcaggtcagctggaaatgctgaaggtgaaatacgaggaggctttggaggccaggaaa
aaggcagagcttgaaattgaagccttcaaaccggatgtggatgcagccacatctgcccga
attgccttggaaaaacgactggaaaacctggaagtggaacttgagttcctacagaggatt
cacaaaaaggaaatcgaggagctgatggctcagatttatggatctgtggctaaagtagac
gtggctttctcattgcccgatctggcatccgccctcaaacagatccaggctcaatacgac
agtatcgctgcccaaaacctgcaggagatggacgcttggtataaagcgaagtttcaagat
ctaaacaaagcaacatcacggcacgtggaaacagcaaggagcgtcagagaggaaatgaca
gcttacaagagagagattcagaataaacagagagaactggaggctcttaaaaacaggaat
gaagcactgctgctccagatgcgggaggcacaggagagatacaagaaagaggaggcggag
ctacagatccgtattgagactctaaaggaggaactgaagtctattaaggggaagattgca
cttctgctgagagattatcaggatctgctcaacgttaagatgtcactggagattgaaatt
accacatacaggaagctgattgaaggagaagacagtcgcttgtccaatatggtgagcagc
ctgtctctcatgagcgtgagcgcaggaatggtcagcagcatttctggtgcagcagcagca
gcccgcagtcaggcgatcagtggagcggtgagctcatccgcctctgagaagatgctttcc
agcagcacgatagtcgaccacaaccatcacgagtcagtggaggagttcactcacgagcag
gcggtggagatgacggagaggaagaccgtcctcattagaacagttaggacagatgaggac
acgtttcaaagggacacacaagaacgaaccatcactatctctggtgccgcagatgagact
gattga
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