Labeo rohita (rohu): 127163889
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Entry
127163889 CDS
T09007
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04150
mTOR signaling pathway
lroh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127163889 (lrp6)
04150 mTOR signaling pathway
127163889 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127163889 (lrp6)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
127163889 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
SGL
EGF_LRP2
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
127163889
NCBI-ProteinID:
XP_050963346
LinkDB
All DBs
Position
4:46338221..46363390
Genome browser
AA seq
1620 aa
AA seq
DB search
MGAVLQSLLLCTLCLQIRGLPLLLYANRRDLRLVDAAHGRANATVVIGGLEDAAAVDYVY
AQGLIYWSDVSEESIKRTLFNGSAPGGVQTTVVSNLASPDGLACDWMGNKLYWTDSETNR
IEVAELDGTYRKVLFWQDLDQPRAIALDPGRGYMYWTDWGEIPKIERAGMDGTHRSVIID
SEIYWPNGLTLDYGQQKLYWADAKFNFIHRSNPDGSGREVVVKGSLPHPFALTLYEDTLF
WTDWNTHSIHACHKHTGENSREIHTNIFSPMDIHVYSQKRQPLEATSPCALKNGGCSHLC
LLSPVKPYYQCACPTGVQLLDDNKNCRDGASQLLLLARRTDLRRISLDTPDFTDIVLQAD
DIRHAIAIDYDPVEGHIYWTDDEVQAIRRSYLDGSDAQFVVTSQVNHPDGIAVDWIARNL
YWTDTGTDRIEVTRLNGTMRKILISEELDEPRAIVLDPVAGYMYWTDWGEVPKIERAALD
GTERLVLVNTSLGWPNGLALDYTERKIYWGDAKTDVIEVMEMDGSGRRVLVDDNLPHIFG
FTLLGDYIYWTDWQRRSIERVHKRSLEREVIIDQLPDLMGIKATYVHETFGVNPCAHANG
GCSHLCLYKPQGVSCACPIGLELMADLTTCIVPEAFLLFSRHTDIRRISLETNNNNVAIP
LTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSSLEHVVEFGLDYPEGMAVDWLGK
NLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGRPKIDRAA
MDGSGRITLVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGLEREVIADDLPHPFG
LTQYQDYIYWTDWSQRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQGGWNACASTN
GHCSHLCLAVPVSSFVCGCPAHYSLNYDNKTCSAPTSFLLFSQKTAINRMVIDELQSPDI
ILPIHSLRNVRAIDYDPLDRHLYWIDSKQNVIRRAQEDGNQSVAVVSGAVGGPNLGLQPY
DLSIDIYSRFIYWTSEVTNVVNVTRTDGSRVGVVLRGEHDKPRAIVVNPERGYMYFTNLQ
ERSPKIERAALDGTEREVLFFSNLGKPVALAVDNELGKLFWVDMDLRRIESSDLSGANRI
VIEDSNILQPVGLTVFGNFLYWIDRQQQMIERIDKVTREGRTKIQARIASLSDIHAVHEL
DMEEYNKHPCTSDNGGCSHICIVKGDGTTRCSCPVHLVLLQDELSCGEPPTCSPEQFSCA
SGEVDCIPQAWRCDGFAECDDSSDELDCPVCSDEEFQCDSKQCVDISLRCNGEINCQDRS
DENKCEVHCPVDQFTCANGQCIGRHKKCDHNMDCTDNSDEIGCYATEEPSFPPTNTIGSI
VGVVMVLFVVGAVYFVCQRVLCPQMKDDGETMTNDFVVHGPSSVPLGYVPHPGSLSGSLP
GMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATVRSQ
YTMEFGYSSNSPSTHRSYSYRPYSYRHFAPPTTPCSTDVCDSDYTPGRRAPHASSAAAAT
KGYTSDLNYDSEPLPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDSS
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgggtgccgtactacagagtctcttactgtgtactttgtgtttgcagatacgaggcctg
ccgctcctcttatatgcgaaccggcgggacttgcggttggtggacgcggctcacggtcgg
gcgaacgccaccgtggtgatcggcggtttggaggacgcggcggcggtggattacgtttac
gcgcagggactgatttactggagcgacgtgagcgaggagtctatcaaacggacgctgttt
aacgggtcggcgcccggcggggtccagaccacggtcgtgtccaatctggcctctccggac
ggcctggcctgcgactggatggggaataagctctactggaccgactcggagaccaatcgg
atagaagtggccgaactggacgggacgtaccggaaagtgttgttctggcaggatctggac
cagccgagagccatcgctctggatccgggccgagggtacatgtactggacggattggggt
gagatcccgaaaatcgagcgcgctgggatggacgggacgcatcgctccgtcatcatcgac
tctgagatctactggcccaacggactgacgctcgactacggccagcagaaactgtactgg
gccgacgccaagttcaactttatccaccgctccaacccagacggttcgggcagggaggtg
gtggtgaagggctcgctgccgcacccgttcgcgctgacgctgtacgaggacacgctcttc
tggacggactggaacacgcactccatccacgcctgccacaaacacacgggagaaaacagc
cgcgagatccacaccaacatcttctcccccatggacatacacgtctacagccagaagcgc
cagccgctggaggcgacgagtccctgcgcgctgaagaacggaggatgttctcatctgtgt
ctgctgtctccggttaaaccctattaccagtgcgcctgtccgaccggcgtccagctgctg
gacgacaacaagaactgcagagacggtgccagtcagctgctgcttctggcgcgacgcacg
gacctgcggcgaatctctctggacacgcccgacttcaccgacatcgtgctgcaggccgac
gacatccggcacgccatcgccatcgactacgacccggtggagggacacatctactggacg
gacgacgaggtgcaggccattcgcaggtcctacctggacgggagcgacgctcagtttgtg
gtgacctcgcaggtgaaccacccggacgggatcgccgtggactggatcgcacgaaacctg
tactggaccgacaccggcacggaccgcatcgaggtgacgcgactgaacggcaccatgaga
aagatcctgatatcggaggagctggacgagcccagagccatcgtgctggaccccgtcgcc
gggtacatgtactggacggactggggtgaagtgccgaagatcgagcgtgcggcactggac
gggacggagcggctggtgctggtcaacacgtctctgggctggccgaacggactggcgctc
gactacaccgagaggaagatctattggggagacgccaagaccgacgtcatcgaggtgatg
gagatggacggatcgggccggcgggtgttggtggacgataacctgcctcacatcttcggt
ttcacgctgctgggcgactacatctactggacggactggcagcggcgcagcatcgagcgc
gtgcacaaacgcagcctggagcgcgaggtcatcatcgaccagctgcccgacctcatggga
atcaaggccacatacgtccacgagaccttcggtgtgaacccgtgcgcgcacgctaacggc
ggctgcagtcacctgtgtctctataagccgcagggcgtgtcgtgcgcgtgtcccatcggt
ctggagctcatggccgatctgaccacctgcatcgtccccgaggccttcctgctgttctcc
cgccacacggacatcagacgcatctcgctggagaccaacaacaacaacgtggccattcca
ctcaccggcgtcaaggaggcgtccgcgctcgacttcgacgtcaccgacaaccgcatctac
tggaccgatataacgctgaagaccatcagtcgcgcgttcatgaacggcagctctctggag
cacgtggtggagttcggactggactatcccgagggaatggccgtggactggctgggcaag
aacctgtactgggccgatacagggaccaatcgcatcgaggtggccaaactggatgggcag
cacagacaggtgctggtgtggaaggatctggacagcccacgagcactggcactggacccg
gccgagggcttcatgtactggacggagtggggtggacggccaaagatcgaccgcgccgcc
atggacggttccggacgcatcactctggtgccaaacgtgggtcgcgcaaacggactgacc
attgactacgccgagcggcggctgtactggacggacctcgacaccacgctgatcgagtcc
tccaacatgctgggtctggagcgtgaggtgatcgctgacgatctgccgcacccgttcgga
ctcacgcagtatcaggactacatctactggaccgactggagccagcgcagcatcgaacgg
gcaaacaagaccagcgggcagaaccgcaccatcatacagggccacctggactacgtcatg
gacatcctggtgtttcactcgtccagacagggcggctggaacgcgtgcgcgtccaccaac
ggccactgctcacacctgtgtctggccgttcccgtcagcagcttcgtgtgcggctgcccg
gcgcattactcgctcaactacgacaacaagacatgcagcgcgcccacgtccttcctgctg
ttcagtcagaagacggccatcaaccgcatggtcatagacgagctgcagagtcccgacatc
atcctgcccatccacagcctcagaaacgtgcgcgccatcgactacgacccgctcgaccgg
cacctctactggatcgactccaagcagaacgtcatccggcgcgcgcaggaggacgggaac
cagagcgtggcggtggtgtccggagcggtgggcggccccaacctcggcctgcagccctac
gacctcagcatcgacatctacagccgcttcatctactggaccagcgaagtgaccaacgtc
gtcaacgtcacgcgcacggacggatcgcgggtcggcgtggtgctgcggggggagcacgac
aaaccccgcgccatcgtggtcaatccggagagagggtacatgtacttcacgaatctgcag
gagcgctcgccgaagatcgaacgcgccgccctggacgggacggagcgtgaggttctgttc
ttcagtaatctgggcaagccggtcgctctggccgtcgacaacgagctgggaaaactcttc
tgggtcgacatggacctgaggcgcatcgagagcagcgatctgtccggagccaatcggatc
gtcatcgaggactccaacatcctgcagccggtgggtctgacggtgtttgggaatttcctg
tactggatcgaccggcagcagcagatgatcgagcgcatcgataaggtcacgcgtgaggga
cgcaccaagatccaggcgcgcatcgcgtctctgagcgacatccacgccgtccacgagctc
gacatggaggagtacaataaacacccctgcacgtccgataacggcggctgctcgcacatc
tgcatcgtcaaaggagacggaaccacgcgctgctcgtgtcccgttcatctggtgctgctg
caggacgagctctcctgcggagagccgcccacgtgttctcctgagcagttctcctgcgcg
tccggcgaggtcgactgcatcccgcaggcctggcgctgcgacggtttcgccgagtgcgac
gacagcagcgacgagctcgactgtcccgtttgctccgacgaggagttccagtgcgacagc
aagcagtgcgtggacatttcgctgcgctgcaacggggaaatcaactgccaggaccgatcg
gatgagaacaaatgcgaagttcactgtcccgtggatcagttcacctgcgccaacggccag
tgcatcggacgccataagaaatgtgaccacaacatggactgcacggacaactcggacgag
atcggctgctatgccacagaagagccttcctttcctccgacgaacaccatcggctctatc
gtgggtgtggtgatggtgttgttcgtggtgggcgccgtgtatttcgtgtgccagcgcgtc
ctgtgtcctcagatgaaggacgacggcgagaccatgaccaatgacttcgtggtccacggg
ccgtcgtcggtgccgctgggatacgtgcctcaccccggctctctgagcggctcgctgcca
ggcatgtctcgcggaaaatcggtcatcggctcgctgagcatcatgggtggcagcagcggg
ccgccgtacgaccgcgcgcacgtgaccggagcctcgtccagcagttcctccagcaccaag
ggcacgtacttccctccgattctcaatccccctccgtctcccgccacagtgaggtctcag
tatacgatggagttcgggtactcgtcgaacagcccgtcgacgcaccgatcgtacagctac
aggccgtacagctaccgtcacttcgcccctccgacgacgccgtgcagcacggacgtgtgc
gacagcgactacacgccgggccgccgggctccgcacgcgtccagcgccgccgccgccacc
aagggctacaccagcgacctgaactacgactcggagccgctgccgccgccgcccaccccg
cgcagccagtacctgtcggcggaggagaactgcgagagctgcccgccgtcgccctacacc
gaacgcagttactcgcaccacctgtacccgccgccgccctcgccctgcacggactcgtcc
tga
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