Labeo rohita (rohu): 127163961
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Entry
127163961 CDS
T09007
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127163961 (rtcb)
Enzymes [BR:
lroh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
127163961 (rtcb)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
127163961 (rtcb)
Prokaryotic type
tRNA splicing ligases
127163961 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
127163961
NCBI-ProteinID:
XP_050963511
LinkDB
All DBs
Position
4:45552527..45557370
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISQKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataatgacgagcttcagtatctagataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgccgaatatgcaggtggagggtgttttctatgtgaatgat
cctctggagaagctcatgttcgaggagctgagaaacgcctgtcgtggtggagggtttggt
ggtttcttgcctgctatgaagcaaattggaaatgttgctgccctaccaggaattgtccat
aggtctattggcttgcctgacgtccactccggatatggttttgctatcggaaacatggct
gcctttgacatggatgacccaacggccgtggtctctcccggtggtgtggggtttgacatt
aactgtggggtccgtctgctgaggactaacctggacgagggcgacgtgcagccggtgaag
gagcagctggctcagtccatgtttgaccacattcctgtcggagttggatccaaaggcgtt
attcccatgggagcaaaagatctggaggaagctctagagatgggtgttgattggtcgctg
agggaaggatacgcctgggctgaggataaggaacactgtgaggaatatggccgaatgctg
caggccgaccccaacaaagtctcttctaaagccaagaagagaggactgccacagttaggt
acgctgggtgcaggaaaccactatgctgagattcaggtggtggatgagatctataatgat
tacgcagcgaagaagatgggcatcgaccacaaggggcagatctgtgtgatgatccacagc
ggcagtcgaggcctcggccatcaggtggcaacagatgctttggttgcgatggagaaggcg
atgaagcgggataaaatcacggtgaatgaccgtcagttggcctgtgctcgcatcacgtct
cctgagggtcaggactatctgaagggtatggcagcggctggcaattacgcctgggtcaac
cgttcctccatgaccttcctcacccgccaggcattctccaaagtcttcaataccacacca
gatgatctggacatgcacgtcatctatgacgtctcacacaacatcgccaaggtggaagag
cacatggtggacggcaaacagaagacgcttcttgtgcacagaaagggatcaacacgagcc
ttcccaccacaccatccactcatacctgttgactaccagctgaccggccagccagttctg
atcggaggaacgatgggcacctgcagttatgtgctgacgggcacagagcagggcatgaca
gagacgttcggcaccacgtgtcacggagcgggtcgagctctatccagagccaaatccaga
cgcaacttggacttccaggacgttctggataaactggcagacatgggtattgccatcaga
gtggcatcaccaaagctggtgatggaggaggctcctgaatcctataagaacgtcacagac
gtggtgaacacgtgccacgatgctggcatcagtcaaaaggccatcaagctcaggcccatc
gctgtaattaaaggctga
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