KEGG   Labeo rohita (rohu): 127164310
Entry
127164310         CDS       T09007                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
lroh  Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lroh01009]
    127164310 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lroh03036]
    127164310 (kdm5a)
Enzymes [BR:lroh01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     127164310 (kdm5a)
Protein phosphatases and associated proteins [BR:lroh01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     127164310 (kdm5a)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    127164310 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel zf-C5HC2 PHD PHD_5 PolC_DP2
Other DBs
NCBI-GeneID: 127164310
NCBI-ProteinID: XP_050964127
LinkDB
Position
4:12521194..12530992
AA seq 1252 aa
MPVLEQSVLTHISGDISGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVP
AHAAEQLESVMKKVAPELFDSQPDLLHQLVTLMNPNVLMEHGVPVYRTNQCAGEFVVTFP
RAYHSGFNQGYNFAEAVNFCTADWLPVGRQCVAHYRRLQRYCVFSHEELVCKMAADPESL
DVELAAAVVRELSDMIEEESRLRAAVQETGVLSSEQEVFELVPDDERQCWKCKTTCFLSA
LTCSCSPERLVCLHHVAELCSCPAGNKCLRFRYDQDEFPAMLYGVKSRAQSYDTWAKRVT
EALAADNKSKKDLIELKVLMEDAEDRKYPENNLLRSLRDTVKEAETCSSVAQLLLSHKQR
HKRERPESSAQKARSKLTVEELKVFVEQLYRLPCVISQARHVKELLESVEDFHERAQVAL
TDETPDSSKLQALLDLGSGLDVELPELPRLKQELQQARWLDEVRLTLMEPQRLTLELMKR
LIDSGVGLAPHHAVEKAMAELQELLTVSEHWEERARACLQARPRHSLLTLESIVMEAKNI
PAYLPNVLALRDALHKAKEWTAKVEAIQNGSNYAYLEQLEGLLARGRSIPVRLEALPQVE
SQVASARAWRERTARTFLKKNSTYTLLQVLSPRVDIGVYGTSKSKRKRVKELLEKERGLE
LDGLSDLEDGAEDARDPATVVAAFKAREQQELEAIHSLRAANLAKMAMVERIEEVKFCLC
RKTASGFMLQCELCKDWFHGACVPLPKAGSQKKLVAGWQGGSKESKFLCPLCQRSRRPRL
ETILSLLVSLQKLPVRLPEGEALQCLTERAMGWQDRARQALATDELSSALAKLSVLSQRM
VELAAREKTEKIINAELQKAAANPDLQGHIQTFQQAGFSRATSPRPTTMDYDDEETDSDE
DIRETYGYDVKDSGEVKPYLFCDEEIPVKSEEVVSHMWPTTPSFCAEHAYSSASKSCPQN
PSAPRKQPRKTPLVPRSLEPPVLELSPAAKAQLEELMMEGDLLEVSLDETQHIWRILQAT
HPPSEDKFLQVMEPEDAPLDKPVKLKVKDAEKKRKRKLERAEQQLLLAGGGVEGRSKSKD
MKRVLELKPKKKKLKLSPDKSRELKQLAKRLAKEEKERKRKEKAAAKAEFPKEGLEKKSR
KILDIPSKYDWSGAEDSNDENAVCAAKNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSCE
MAENEDYICSACSRKAAGAAVKVGAETVVLSSPVCGGPSVPPPLQTDPQESS
NT seq 3759 nt   +upstreamnt  +downstreamnt
atgccggtgctggagcagtcggtgctgacgcacatcagcggggacatcagcggcatgaag
ctgccctggctctacgtgggcatgtgcttctcgtccttctgctggcacatcgaggaccac
tggagctactccatcaactacctgcactggggcgaacccaagacctggtacggcgttcca
gcgcacgccgccgagcagctggagtccgtcatgaagaaagtggctccggagctcttcgac
tctcagccggacctcctgcaccagctggtcaccctgatgaaccccaacgtcctcatggag
cacggcgtcccggtgtaccggaccaatcagtgcgcgggagagtttgtggtcacgttcccc
agagcctatcacagcggcttcaatcaaggctacaactttgctgaagcagtcaacttctgc
actgcagactggctgcccgtcgggaggcagtgtgtggcgcattaccggcgtctgcagcgc
tactgcgtcttctcccacgaggagctggtgtgtaagatggccgccgatccggagagtctg
gacgtggagctggcggcggccgtggtccgagaactcagcgacatgatcgaggaggagagc
cgactgagagcggccgtgcaggagacgggggtgctgtcctcagagcaggaggtgtttgag
ctggtgcccgatgacgagcggcagtgctggaagtgtaagaccacctgcttcctgtcggcg
ctcacctgcagctgcagcccggagcgtctggtgtgtctgcatcacgtggccgagctctgc
agctgcccagccggaaacaagtgcctgcggttcaggtacgatcaggacgagtttcccgcc
atgctctacggggtgaagtcgcgcgcgcagtcttacgacacctgggccaagagggtcacg
gaggcgctggcggccgataacaagagcaagaaagatctgatcgagctgaaagtgctgatg
gaggacgcggaggacaggaaatacccggagaacaacctcctgcgcagcctcagagacacg
gtgaaggaggccgagacctgctcgtccgtagctcagctgctgctcagccacaaacagaga
cacaaaagagaacgtcccgagagcagcgcacagaaagcacgcagcaaactgacagtggag
gagctgaaggtgtttgtggagcagctctaccgcctgccctgcgtcatcagccaggcccga
cacgtcaaggagctgctggagagcgtggaggactttcacgagcgggcgcaggtggcgctg
accgacgagactccggactccagtaagctgcaggcgctcctggacctgggctcggggctg
gacgtggagctgccggagctgccgcgtctcaagcaggagctgcagcaggcgcgctggctg
gacgaggtgcggctgacgctgatggagccgcagcgcctcacgctggagctgatgaagcgg
ctcatcgactcgggcgtgggtctggcgccccatcacgccgtggagaaggccatggccgag
ctgcaggagctgctgacggtgtcggagcactgggaggagcgggcgcgcgcgtgcctgcag
gccaggcctcgccacagtctgctgacgctggagagcatcgtaatggaggccaagaatatc
ccagcgtacctgcccaatgttctggccctcagagacgccctgcacaaagccaaagaatgg
acggccaaagtggaggccattcagaacggcagtaactacgcctacctggagcagctggag
ggtctgttagcgagaggacgctccatcccggtcagattagaggccctgccgcaggtggag
tcacaggtggcgtctgccagagcctggagggagaggaccgcccgcacatttctcaagaag
aactccacctacacactactgcaggtgctcagtccgcgtgtggacatcggcgtgtacggc
accagcaagagcaaacgcaagcgcgtgaaggagctgctggagaaggagcgcggcctggag
ctggacggtctgagcgacctggaggacggcgcggaggacgcccgtgaccccgccacggtc
gtggccgccttcaaagcccgagagcagcaggagctggaggccatccactcgctccgcgcc
gccaacctggccaagatggcaatggtggagcgcatcgaggaggtgaagttctgcctgtgc
cgcaagacggccagcggcttcatgctgcagtgcgagctgtgcaaggactggttccacggc
gcctgtgtgcccttacccaaagccggctcgcagaaaaagctggtggccggctggcagggc
ggcagcaaagagtccaagttcctgtgcccgctgtgccagcgctcgcgacggccccggctg
gagaccatcctgtccctgctggtgtctctgcagaagctgccggtgcggctgccggagggc
gaggcgctgcagtgtctgacggagagggccatgggctggcaggaccgcgcgcgacaggcc
ctggccaccgacgagctctcctccgccctggccaagctgtccgtgctcagccagcgcatg
gtggagctcgccgcccgagagaagaccgagaagatcatcaatgccgagctgcagaaggcg
gccgccaacccggacctgcaggggcacatccagacgtttcagcaggccggtttcagcaga
gccacgtcaccacggcctacgacgatggactatgatgacgaagagacggactcggacgag
gacatcagagagacgtacggatacgacgtcaaggactcaggagaggtgaagccgtacttg
ttctgtgacgaggagattcccgtgaagtcggaggaggtggtcagtcacatgtggccgacg
acgccgtcgttctgcgctgaacacgcgtactcgtctgcctccaagtcctgtcctcagaat
ccgtccgccccacgcaagcagcccaggaagacgccgctggtgccgcgcagcctggagcct
ccggtgctggagctgtcgccggcggccaaggcccagctggaggagctgatgatggagggc
gacctgctggaggtgtctctggacgagacgcagcacatctggaggatcctgcaggccacg
cacccgccctcagaagacaagttcctgcaggtgatggagcctgaggacgcgccgctggac
aaacccgtcaagctgaaggtgaaggatgcggagaagaagaggaagaggaagctggagaga
gccgagcagcagctgcttctggccggcggcggcgtggagggacgatccaagtccaaagac
atgaaacgggttctggagctcaagcccaagaagaagaagctgaagctgagcccggacaag
tcccgcgagctgaagcagctggccaaacgtctcgctaaggaggagaaggagcgcaagagg
aaggagaaggcggcggccaaggctgagtttcccaaggaggggctggagaagaagagccgg
aagattctggacattccctctaagtatgactggtccggggcggaggactccaacgacgag
aacgccgtctgcgccgccaagaactgccagcgtccgtgcaaggataaggtggattgggtc
cagtgtgacggcggctgtgacgagtggtttcatcaggtgtgtgtgggtgtgtcgtgtgag
atggccgagaacgaagactacatctgctcggcctgctcgcgtaaagccgccggcgcggcc
gttaaagtgggagcggagactgtggtgctgtcctcgccggtgtgcggcggcccatccgtc
ccgccgccgctccaaacagaccctcaggagagcagttaa

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