Labeo rohita (rohu): 127164316
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Entry
127164316 CDS
T09007
Symbol
gpc6a
Name
(RefSeq) glypican-6a isoform X1
KO
K08112
glypican 6
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lroh00535
]
127164316 (gpc6a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lroh00537
]
127164316 (gpc6a)
Proteoglycans [BR:
lroh00535
]
Cell surface proteoglycans
Glypican family (GPI-anchored HSPG)
127164316 (gpc6a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lroh00537
]
Others
127164316 (gpc6a)
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Gene cluster
GFIT
Motif
Pfam:
Glypican
MRP-S23
Fz
Motif
Other DBs
NCBI-GeneID:
127164316
NCBI-ProteinID:
XP_050964141
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Position
1:complement(47276363..47541949)
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AA seq
563 aa
AA seq
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MLKTPVVVFTSLSLLLSLSCAGDVKSRSCGDVRQAFTTKGFSLHNVPHQEISGEHLRVCS
QGYTCCTSDMEDRLGQQSKLDFEKLVDENSHTIRAIFTSRHKKFDEFFLELLDNSEKSLN
DMFVRTYGKLYTHNSEMFEDLFSELKRYYTGGNVNLEEVLNDFWSRLLERMFQLLNSQYT
FTDDFLECISKYTDQLKPFGDVPRKLKAQVTKAFIAARSFVQGLMVGREVANRVAKVNIS
PGCSKALTKMLYCPYCGGMPGLKPCANYCQNVMRGCLANQADLDPEWNLFIDAMLLVADR
LEGPFNIETVMEPIDVKISEAIMTMQDNSMQVSSKVFQGCGHPKPDGVGRSARGISDVFN
SRFRPYSPEERPTTAAGTSLDRLRIVWRTMQHSVIDIKEKLKESKKFWSSLPDSICAEDE
VTDPDEEQCWNSHTKGRYFPEVVKDGLTNQLNNPEVEVDITRPDTFIRQQIMTLRVMTNK
LRNAYNGKDVYFQDSSDEESGSGSGSGFTTEPEVVHTEPPMLEADKSDPQPPTDAAGHQQ
TLSLQLLFAVTALTWLLLLLRWR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagacacctgtcgtggttttcacttctttatcgcttctattgtcgctgtcatgt
gctggagatgtaaaatcgcgcagctgcggcgatgtgcgccaggcgttcacgaccaaaggc
ttcagtctccataatgtgccacatcaggagatatcaggtgaacatctgcgggtttgctcc
cagggctacacctgctgcacttcagacatggaggacaggctcggccagcagagcaaactg
gatttcgagaaattagtggatgagaacagccacaccatacgggcgatattcacctccaga
cataaaaagtttgacgaattctttctggagttgctggacaactcggaaaagtcgctgaac
gacatgtttgtgcgcacgtacggcaaactgtacacgcacaactcggagatgttcgaggat
ctgttctccgagctgaagcgttactacacgggcggaaacgtcaacctggaggaagtgctg
aacgacttctggtcgagacttctggagcgcatgttccagctgctgaactctcagtacacc
ttcacggacgactttctggagtgtatcagcaaatacaccgaccagctgaagcccttcgga
gacgtgccgcgcaagctcaaggctcaggtcaccaaggccttcattgcggctcgctcgttc
gttcaaggactcatggtgggtcgggaagtggccaacagagtggcaaaggtcaatatatct
ccaggttgcagtaaggcattgactaaaatgctgtactgtccgtactgtggaggaatgccg
ggcctcaaaccctgcgccaactactgccaaaacgtcatgcggggctgcctggccaaccaa
gccgatctggacccggagtggaacctcttcatcgatgccatgctgctggtggctgacaga
ctggaagggcccttcaacatcgagaccgtcatggagcccatagatgtaaagatctctgag
gccatcatgaccatgcaggacaacagcatgcaagtttcatccaaggtatttcagggatgc
ggtcatcccaaaccagatggagtcggccgatctgcccgcgggatctcggatgtgttcaac
agtcgcttcagaccctacagcccagaagagaggccgaccacggcagccggcaccagcctg
gacagactgaggattgtctggaggacgatgcaacacagcgtgatcgacattaaggagaag
ctgaaggagtcgaagaaattctggtcgtcgctgccagacagcatctgtgcagaggacgaa
gtgactgacccagatgaggagcagtgctggaacagtcacacgaagggaagatacttccct
gaagttgtaaaagacggcctcacgaaccagctcaataacccggaggtggaagtggacatc
accagaccggacaccttcatcagacagcagatcatgaccctgcgagtgatgaccaacaag
ctccgaaacgcctacaacggcaaagacgtctacttccaggactccagcgatgaggagagc
ggctcgggcagcggaagcggcttcaccacagaacccgaagtggtccatacggagccgccg
atgctggaagcagacaaaagcgacccgcagccaccaacagacgcggcgggccaccagcaa
acgctttcgctgcagttactattcgctgtaacggccctcacatggctgctgctgctgctg
cggtggagataa
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