Labeo rohita (rohu): 127164425
Help
Entry
127164425 CDS
T09007
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03018
RNA degradation
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127164425 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
127164425 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127164425 (lsm8)
03041 Spliceosome [BR:
lroh03041
]
127164425 (lsm8)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127164425 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
127164425 (lsm8)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127164425 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
127164425
NCBI-ProteinID:
XP_050964331
LinkDB
All DBs
Position
4:complement(39657824..39660152)
Genome browser
AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtctacggctctggagagttacattaaccggacggttgccatcatcacttcagatggc
agaatgattgtggggacgctaaagggcttcgatcagacaatcaatctcatcctggatgaa
agccatgagcgggtgttcagctcttcccagggcgtagagcaggtggtgctgggactgtat
attgtcagaggcgataatgtggctgtaatcggtgagattgacgaagaaacagattctgcg
cttgatcttggaaacataagagcagaaccgctcaattctgtggcgcactga
DBGET
integrated database retrieval system
