Labeo rohita (rohu): 127164802
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Entry
127164802 CDS
T09007
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127164802 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127164802 (msh3)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127164802 (msh3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
PH_AIR9
Motif
Other DBs
NCBI-GeneID:
127164802
NCBI-ProteinID:
XP_050964840
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Position
5:complement(15628117..15702713)
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AA seq
1096 aa
AA seq
DB search
MHSVKSMPANKSSKKSSNQTTISRFFTSANDKSQPTDQAGIKCKDGRHEGRGKKRLSDGG
MSAEKRAKLSHSVEEERDEECKVTPNTLDKTVSSRASVSHATLARLKDFSCSGSSESRVS
DHVMKMEVEPSGSGKAESSAAQHHNAIMKNSPSELEEEVKEEPIKIKQEFSFSQFAKNTV
IKKSSEEPAVPNRRTKSIYTPLEEQYMEIKKQHADTVLCVECGYKYRFFGEDAEIAAKEL
NITCHLDHNFMTASIPTHRLFVHVRRLVSQGYKVGVVKQTETTAIKASGTNKSSLFTRQL
HALYTKSTLVGEDVNPLLKLGDLEQAEDVVQDSGNNYLMCVSESFDKQSKELTVGMVVVQ
PSIGDVMVDCFKDNVSHAELESRVLRIQPVEILVPSDLSETTERLLRNIALSSVQADDRI
RIEKRESSMFEYPTAMQIIKDFYRDTPNPAVGTQEKGSYSLCMGLESPIICCLGPVIQYL
TEFKLEKILLCSSSFKRLSSDADHMQLNAATMKNLEILCNQTTGSVKGSLLWVLDHTQTA
FGKRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSLQSLLTRLPDLERGLCSIYH
KKCSTQEFYVITSTLSRLSAELQALMPAIQSQLSSALLKNLLLDTPQLLSLAHNFLKVLD
EKAAKIGNKTEMFVDLTDFPVIRNRKEEIRSVLSDIMEHRREVRLVLKNPSLDYTTVSGQ
QFLIEVKNSMSSIVPADWVKINSTKVVGRYHTPFIVEKHRRLQQLREQLVIDCNHEWINF
LQLFGDHYYILRKAVCHLATMDCLFSLAQVAKENNYCRPEVLEEKSQILITAGKHPVITS
LMGDQDQYVPNDTHLQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASV
GIVDGIYVRMGASDNISRGRSTFMEELVEASDILARATSRSLVILDELGRGTSTHDGIAI
AYATLESFIRDVKCMTLFVTHYPPLCELEHLYPQHVGNYHMAFLLNEPESTSDEEEVQPE
FITFLYQLTEGAAARSYGLNVARLAEIPESILRTAAFKSKELEALVNSRRTMVRLLSDAW
SITNKEALLDWRNYSC
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgcatagtgtcaaaagtatgcctgcaaacaaatcctccaagaagtccagcaatcagaca
actatcagcagattcttcacaagtgcaaacgataaatctcaaccaactgaccaggccggg
attaaatgcaaggacggacggcatgagggcagaggaaagaagaggttgtctgatggagga
atgtccgcagagaaacgagccaaactctctcacagtgtggaggaggagagagatgaggag
tgcaaagtgacccccaacaccttagataaaacggtatcctctagagccagtgtcagccat
gctaccttggcgaggcttaaagatttcagctgctcagggagctcagagagccgagtctcc
gatcatgttatgaagatggaggtggagccttcaggctctggaaaggctgagagttctgcc
gcacaacatcacaatgcaatcatgaaaaacagcccatctgagttggaggaagaggtcaaa
gaagagcctattaagattaaacaggagttttcttttagtcagtttgccaagaacactgtg
atcaaaaagagttcagaagagcctgctgttcccaacagaagaaccaagagcatatacact
cctctagaggagcagtacatggagatcaaaaaacaacatgcggacacagtgctttgtgtt
gagtgtggctacaagtacaggttcttcggtgaggatgcagagattgctgcaaaggagctc
aatatcacttgtcatctggaccataacttcatgacggccagcatccctactcatcgccta
tttgtgcatgttcggcgcttggtctctcagggctacaaggtaggtgtagtcaagcagact
gaaactacagccatcaaggcctccggcaccaacaagagttctctcttcacacgccaacta
catgcactttacaccaaatctacacttgtaggagaagatgtaaatcctctgctaaagctg
ggagatttggagcaagctgaagatgtggttcaggacagtggcaacaactatctaatgtgt
gtgagcgagagttttgataaacagagcaaagagctgaccgtagggatggtggtggtccag
ccaagcattggggacgtgatggtggactgttttaaagataatgtttcccatgcagagctg
gagtccagggtattgagaatacaacctgtagagatcctggtgccctcagacctctcagag
acgacagagaggttattacgcaacatcgctctgtcaagtgttcaagcagatgatcgaatt
cgcattgagaaacgagaaagctccatgtttgaatacccaactgcaatgcaaattatcaaa
gacttctacagagacacccctaatccagctgtaggaacccaagaaaaaggttcctactcc
ctctgtatgggtctggagagcccgattatttgctgtcttggtcctgtgatccagtatctg
actgagttcaagcttgagaagattttactgtgttccagctcattcaagaggctgtcgagt
gacgctgaccatatgcagctcaatgctgctaccatgaagaacctcgaaatcctctgcaac
cagaccacaggttcagtaaaaggcagtctgctctgggttctggatcacactcaaactgca
tttgggaagagactgttaagaaagtgggtgagccagccactgaagtctgtgattgatatc
caggctcgacaggaggcagtagcagaaattttatcttctgagtccagtgtccttccctca
ctccagtctttgctaactcgtctacctgacctcgagagaggactttgcagtatctaccac
aaaaaatgctctactcaggaattttacgtcattaccagcactctctctcgcctgagtgct
gagcttcaagccctcatgcctgccatccaatcacagctcagctctgcccttctaaagaac
ctcctattggacacacctcagcttctaagcctcgcccacaacttcttaaaagtactggat
gagaaagctgcaaagataggtaataagacagagatgtttgtggatctgactgacttccca
gtgatccggaacagaaaagaggaaatccggagtgtcctatcagacataatggagcatcgg
cgagaggttcgcctggtgttaaaaaacccatctttggactacaccacagtgtctggccag
cagtttctcattgaagtaaagaacagtatgtcatctatagtcccggcagactgggtcaaa
atcaacagcactaaggttgtgggccgctatcacactccattcattgtggagaaacatcgg
cgcctgcagcaactacgagagcagctggttattgactgcaatcacgagtggatcaacttc
cttcagctatttggggaccattactacatcctgaggaaagcagtgtgtcacctagcaacc
atggactgcctcttctcattggctcaggttgctaaagaaaataattactgcaggcctgag
gttcttgaggagaagagtcagattttgatcacggcaggcaagcatccggtcatcacctcg
ctgatgggagatcaggatcaatatgtccccaatgacactcacttacagggggatggcaag
cgagccatgatcatcactgggcccaacatgggtggcaagagctcctacatccgacaagtt
gctctggtgaccatcatggcacagctgggatcctttgttcctgccagagaggcatctgta
ggcattgtagatggcatatatgtcagaatgggagcgtctgacaacatttcaaggggtagg
agcacctttatggaggagcttgtggaagcatcagatattttggctcgtgccacatcccgt
tccctggtcatcctggatgagcttggtcgaggcaccagcactcacgacggcatcgccatc
gcttatgctaccctagagtccttcattagagatgtgaagtgtatgacgttgtttgtgacc
cactaccctccattgtgtgagctggagcacttgtacccgcagcatgtggggaactaccac
atggctttcctgctgaatgaaccagagagcacttctgatgaggaggaggtgcagccagag
ttcatcacatttctctatcagctgactgaaggcgcagccgccaggagctacgggctaaat
gtagcacgtctggctgaaatcccagagtccatcctcaggaccgctgcgttcaaatccaaa
gagttggaggctctcgtgaacagccggaggacaatggtgcgactgttatctgatgcctgg
agtatcaccaataaggaagcactgctggattggagaaactatagttgctaa
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