Labeo rohita (rohu): 127164898
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Entry
127164898 CDS
T09007
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04137
Mitophagy - animal
lroh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127164898 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127164898 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127164898 (vcp)
03009 Ribosome biogenesis [BR:
lroh03009
]
127164898 (vcp)
04131 Membrane trafficking [BR:
lroh04131
]
127164898 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127164898 (vcp)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
127164898 (vcp)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
127164898 (vcp)
Membrane trafficking [BR:
lroh04131
]
SNARE
SNARE associated proteins
Others
127164898 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127164898 (vcp)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127164898 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
TsaE
NB-ARC
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
127164898
NCBI-ProteinID:
XP_050965000
LinkDB
All DBs
Position
5:complement(20862578..20872310)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQGG
SGPSQGSSGGGGGNIFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggtggagaatccaaaaatgatgatctttccactgccattctgaagcagaag
aacaggccaaataggttgattgttgatgaatccatcaatgaagacaacagtgttgtgtct
ctctctcaggcaaagatggatgagctccagctctttaggggagacacagtgctgttgaag
ggcaagaagaggagggagacagtttgcatcgtcctgtctgatgacacctgctctgatgaa
aaagttcgcatgaacagggtggtccgcaacaacctcagagtgcgccttggtgatgtcatc
agtattcagccatgtccagatgtgaagtacggaaagcgcattcatgttctgcccattgat
gacacagtggagggcatcactggcaacctgtttgaggtctatcttaagccttacttcttg
gaggcttaccgaccaatccgtaaaggtgacattttcctggtcaggggaggcatgcgtgct
gtggagttcaaagttgtggagactgaccccagcccgtactgtattgtggccccagacaca
gtgatccactgtgagggggaacccatcaagagagaggatgaggaagagtctctgaatgag
gtaggatatgatgacattggaggggttaggaaacagctcgcccaaatcaaagaaatggta
gagctgcctctgagacaccctgctctcttcaaggctattggagtgaagcctccccgtggc
attctgctgtatggaccccctggaactggaaagactcttatcgctcgtgctgtggcaaat
gaaactggagcattcttcttcctcatcaatggccctgagatcatgagtaaactggcaggt
gaatctgagagcaatttgcgcaaggcttttgaggaagcagagaagaacgcaccagccatc
atctttattgatgaacttgatgccattgcaccaaaaagagagaagactcatggtgaggtg
gagaggcgcattgtgtctcagctgctcactctgatggacggactgaagcagagggctcat
gtcatcgtcatggcagccactaacagacccaacagcattgacccggctctcaggcgattt
ggacgctttgacagagaggtggacatcggcattccagacgcaactggaagacttgagata
cttcagatccacaccaagaacatgaagcttgcagatgatgttgatctggagcaggtggca
aatgagacccacggccatgtgggtgctgatctggccgccctttgctcagaggctgccctg
caagccatcagaaagaaaatggaccttattgatctggaggatgagaccatcgatgcagag
gttatgaactccctggctgtaacaatggatgacttcaggtgggctcttagccagagcaac
ccatctgccctgagagagacggttgtggaggtgcccaacatcacctgggaggatattggt
ggccttgatgatgtcaagagagagctgcaggagctggtgcagtacccagtggaacatcca
gacaaattccttaagtttggcatgaccccatccaagggtgtgctgttctatggaccacca
ggttgtggtaaaaccctgctggccaaggccattgccaatgagtgccaggccaatttcatc
tcaatcaagggcccagaactgctcaccatgtggtttggagagtctgaggctaacgtccgt
gagatctttgacaaggctcgtcaagctgctccctgtgtgctgttcttcgatgaattggac
tccattgctaaggctcgtggtggaaacgttggtgacggtggcggcgctgctgacagagtc
attaaccagattctcacagaaatggacggtatgtccagcaagaagaacgtcttcatcatt
ggggccaccaacagaccagacatcattgaccctgccatcctcaggcctgggcgactggac
cagcttatctacatcccactgcctgatgagaagtctcgcattgccattctcaaagctaac
ctcaggaagtctccaatctcaaaggacgtggacctggacttcttggccaagatgaccaat
ggcttttcaggtgctgacttgactgagatctgtcagagagcctgtaaactggctatccgt
gagtccattgagaatgagatcagacgggaacgtgagaggcagaccaacccttctgcaatg
gaggtggaggaggatgacccagtgcctgagattagaaaggaccatttcgaggaagccatg
cgctttgcccgccgttccgtcagcgataacgacatccgcaaatacgagatgttcgcacag
accctgcaacaaagcagaggctttggcagtttcagattcccatccagtaaccaaggagga
agtggaccaagtcagggctcttctggtggcggcggaggcaacatcttcaatgaggacaac
gatgatgatctttatggataa
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integrated database retrieval system
