Labeo rohita (rohu): 127165052
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Entry
127165052 CDS
T09007
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127165052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127165052
03036 Chromosome and associated proteins [BR:
lroh03036
]
127165052
Transcription factors [BR:
lroh03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
127165052
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
127165052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
127165052
NCBI-ProteinID:
XP_050965280
LinkDB
All DBs
Position
5:complement(33090017..33121767)
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AA seq
1754 aa
AA seq
DB search
MSAEVLRPGPVAGGGSKLGELIGKLHEYLAATTEDKTEPPLPGHWNGTTAKEYLEQQAHA
QSSGASEVGMLSSSRSRRKPAVVTKHSGMNESDASSESGAEDVMSVHSSDPDTNILPKGT
VFVLPEPVGNEARDDFRGPEFRSRRVYKQHRDGVDRRRGGYEMERVNCTACGQQVNHFQR
DSVYRHPMLKVLICKSCYKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAFCKKC
VLRNLGRKELSTILEEERKWYCYVCSPEPLVELVLACDSVLENLEQAQKRVSRPEPNSVR
GRANKGGRGAAYLMGAVPSAGLYQRMQRFVDVTTSLSHSFKAVVQSEREGEGNRMERIGQ
LRMFRAVLDDLQAANSALQEALDHELRGSKRASGTHKPKAKGRRKKGMASRSPEVTKKLV
VKLTPVPVSPKPISSTCLSIHPPPDRPTIKSGVTDGALEESGTLVEMEKGMEMEGTTERG
EDVENYCVNNDEEEEEEEEEDEEEEEEEDQTDPKSLSLSEENKRSPRVKTTPRRRRTNTS
TTAEHAGLPEDSDSDEVPEVLLQTAATMANSEEEGLVGSSWDGDEVNQQVRKQRLFGLVK
TTPPDRGTRKRNLKERSSSSSSSSSASSRRGSQDQGSTVRMTRGRARKVARMTGQSGSSS
SEVGGQELESGPSSDSDDQKIKPLTEGVTLLGSGNFQQSSGDEMDIQPGPSLSVEDDDLE
NRIAKKILLAQIRANLSSASELDASSDEQSESTREEQKKSKTKTSETTEEEDNDGSDCSG
SQSGSRHRHRLLRHGLTLSEAEVKSQKQEVKKKKEREVQESECVVVSSDESSETSISSGV
YDELSHSECEEMGSQSPTHNETFQSPSRTPDRSTTADNDDSPTAEEHLKGTPRGRRQIRP
LLEVGQLAKETQSALKEEEERRRRLAEREKQRLEIERREREDADSEVILVSEKPANSFAP
LVLEQDDVTHKPVLQVHMHFLSKLKPHQREGVRFMWDCCCESIQSVKTTPGSGCILAHCM
GLGKTFQVIVFLHTVLLCKELPLKRALVVCPLNTVLNWRSEFDQWQRGLRPNVLRVSELA
TVKSVPVRVELLNDWFTNGGVMIMGYEVFRILTHTDSVKYSKHKEAFRSMLLDPGPDLVV
CDEGHVLRNADSSISKAIRALRTRRRIILTGTPLQNNLTEYHCMVNFIKENLLGSLKEFR
NRFINPIQNGQCADSTPADVRLMKNRSHVLHQMMSGFIQRRDYSVLMSCLPPKHEYVLSV
RMTPLQCRLYTHYLQNYTGKGAGVNSLFQDLHVLSLIWTHPWCLKLAQLSRNKGKEEGPA
PVFTGLGAGLVSDSAKPNDSEGRAAATTGLVGDGEKNTDPVSLDSGANQIPQNPQNPDVT
NTATMGISGFVVGNGPSADWYLPFVTAADAKVLEHSGKLQLLLEILHWAEELQDKVLVFS
QSLISLDLIESFLLYADETRGNICCPYKGNKSWVKNKDYYRLDGTTSACARKRWAQEFNN
TKNIRGRLFLISTRAGSLGINLVAANRVVVFDACWNPSYDIQSIFRVYRFGQKKTVYVYR
FLAQGTMEQNIYERQVAKQSLSSRVLDQQQIQRHFTHSQLSELYCFRPDLRPSKHTEMPV
DDLLAQLLQSCEQLIVSYHEHNSLLDHREEEELSEEERRAAWDEYRAEKKASVQNSNEPA
PKNINQGLQFFHLQQALASRNLAFLTNSVPSTTSLPVKQATGQRSAAWSTYNNTNISFRL
EQPNVVSSGSKTNT
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaagtcctcagacccgggccggtggccggtggaggcagtaagctaggtgag
ctgatcgggaagctccacgagtacttggcagcaaccacagaagacaagactgaacctcct
ttacctggacactggaatggaactacggccaaggaatacttggagcagcaggctcatgcc
cagtccagtggtgcctcagaagtgggaatgttgtcgtcatctcgttcgagaaggaaaccg
gctgttgtcaccaaacacagtgggatgaacgagtcagatgcttcgtctgagagtggagct
gaagatgtaatgtcagtccactccagtgacccagacaccaacatcctacccaaaggaacg
gtgtttgtgctgccggagccggtgggtaatgaagctcgtgatgatttccgtggtccagaa
ttccgcagtagacgtgtttacaagcagcacagagatggtgttgacagacgcagaggagga
tatgagatggagagggtaaactgcacagcgtgtggtcagcaggtgaatcatttccagcgt
gactcagtctacaggcacccaatgctaaaagtcctcatctgcaagagttgttataagtat
tatatgagtgatgacatcagcaaagattcagagggaatggatgagcaatgcaggtggtgt
gcagagggaggcagtctgattggctgtgattactgcagtaatgccttctgtaagaaatgt
gttctgcgtaacctggggaggaaggaactgtccaccatcctcgaggaggagaggaagtgg
tactgttacgtgtgcagtcctgagcccttggtggagctggttttggcctgtgattcggtt
ctagagaacctggagcaggctcagaaacgcgtctcccgtcctgagccgaactcggtccgg
gggagggctaataagggtggtcgtggagcagcctatctgatgggggcggtaccctctgca
ggtctctaccagcgaatgcagcggtttgtagatgtcactacatctctgagccattccttc
aaggcagtcgttcaaagcgaaagagaaggggaaggaaaccggatggagagaattgggcag
ctaaggatgttccgcgctgtgctggatgatctgcaagccgccaacagtgcattacaggaa
gccttggaccatgagctgagagggtcaaaacgtgccagtggaacgcataagccaaaagcg
aagggcagacggaaaaagggaatggcatcacggagcccagaagtcactaaaaagctggtg
gttaaactcactcctgtaccggtcagcccaaaacccatcagcagtacatgtctttccatt
catccaccacctgacagaccaacaataaagagtggggtgacagatggcgcactggaagaa
agtgggacattggtggagatggagaaggggatggaaatggagggaacaactgagagagga
gaagatgtggaaaattattgtgttaataatgacgaggaagaggaggaggaggaggaagaa
gatgaggaggaggaggaggaagaggaccaaactgacccaaaaagtttgtctttatctgag
gagaacaagcgttccccacgtgtgaaaactacaccacgtcggcggcggacgaacacgagc
accacagcggagcatgctggtttacctgaggactctgattctgatgaggtgcctgaagtg
ctgctccagaccgccgctaccatggcaaacagtgaggaagagggcttggtaggtagcagt
tgggacggggatgaggtaaaccagcaagtcagaaagcagcgtctctttggactggttaaa
accacacctcctgacagaggtactcgtaagcggaatctcaaagaaagatcctcatcgtcc
tcatcgtcctcttctgcatcttcaagaaggggctcccaggaccaagggtcaacggttaga
atgaccaggggaagagcccgcaaagttgccaggatgacgggacagagcgggagttcctca
agtgaggtgggaggacaggaactggagagtgggccgagcagtgactctgacgatcagaaa
atcaaaccgctgacagagggcgtcactttgctgggctctggaaatttccagcagtcttcc
ggtgatgagatggacatccagccaggtccgtctttgtctgtggaggacgatgatttagaa
aatagaattgcgaagaagattctactggctcagattagagctaacctctcgtctgcttct
gagctggacgccagctctgatgaacaatcagaaagcacaagagaagagcagaagaagagc
aagaccaaaacatcagagacaacagaagaggaagataacgatggctcagattgcagtggg
tcacagtcagggtcacggcaccggcaccgattgcttcgacatggtcttactttatcagaa
gctgaagtaaaaagtcaaaagcaagaggtgaagaagaagaaagaaagagaagtccaagaa
tcagaatgtgttgttgtgagtagtgatgaatcaagcgaaacgagcatatcgagtggcgtg
tatgacgaactcagccattcagagtgtgaggaaatggggtctcagtcacccactcataat
gagacgtttcagagtccatcacgcacacctgacaggagcaccactgctgataatgatgac
tctccaaccgctgaggagcatttgaagggcactccgcgagggcggaggcagattaggccg
cttctagaggtgggtcagctggccaaggagacgcagagcgctctgaaagaagaggaggag
cgcaggaggagattagcggagagagaaaaacagagattggaaattgagaggagagaacga
gaagatgcagattcagaggtcatcttagtgtctgagaaaccggcgaatagcttcgcaccg
ttggttctcgagcaagatgatgtaacacataagcccgtgctgcaagtgcacatgcacttt
ctgagcaaactcaaaccgcaccagcgagagggtgtgcggttcatgtgggactgttgttgt
gagtccattcagagtgtgaagacaactccaggctctggctgtattctggcccactgcatg
ggtctgggaaagacttttcaggtcattgtgttccttcacacagtgctgctatgtaaagag
ctgccactgaaaagggctctggtggtgtgtcctcttaacacagtgctgaactggaggagt
gagtttgaccagtggcagaggggcttaagacccaacgtactgagggtgtcagaactggct
acagtaaagtctgtgcctgttcgtgttgagctcttaaatgactggtttacaaatggtgga
gtcatgatcatgggttatgaggttttccgcatactgacgcacacagacagtgtgaaatac
agcaaacacaaggaagccttccgctcaatgctcctggatccaggccctgatctggtggtg
tgtgatgagggtcatgtccttaggaacgcagactccagcatctcaaaagccatacgagct
ctacgcacacgtaggagaatcatattgacgggaacaccgcttcaaaacaaccttactgag
tatcactgcatggtgaacttcattaaggagaacctgctgggttctctaaaggagttccgg
aaccgatttattaatccaattcagaacggccagtgcgcagactccacccctgctgatgtc
agactgatgaagaatagatcgcacgtcctccatcagatgatgtcaggattcatacagagg
cgggactactcagtcttgatgtcctgtttgccaccaaagcacgagtatgtgctgtcagtc
aggatgacacctttgcagtgtcggttatacacgcactatctgcagaactacacaggtaaa
ggagcaggtgtgaacagtttgtttcaggaccttcatgttctgagtttgatatggactcat
ccctggtgtcttaaacttgctcagctgagcaggaataagggcaaagaggaagggcctgct
cctgtcttcacaggtctgggtgcaggtttggtgagcgattctgcaaagccaaatgactct
gaaggaagagcggcagcaaccacaggcttagtgggtgatggagagaaaaatactgatcca
gtctccttggacagtggggccaatcaaatccctcaaaatccacaaaatcctgatgtcaca
aacacagccacaatgggaatttctggatttgttgtgggtaacgggccatctgccgactgg
tatctgccgtttgtaacagcggctgatgccaaagtgctggagcattctgggaaattgcag
ttgctactggagattttacactgggcagaggaactacaggacaaagtgttggtgtttagt
cagtctctgatatcactggaccttattgagagtttcctcctgtatgcagatgagaccagg
ggaaatatatgttgtccatacaaaggaaacaaatcgtgggttaaaaataaagactattat
cgtttggacggcaccaccagtgcttgtgctcgcaagagatgggctcaggagtttaacaac
accaaaaacataagagggaggttgtttctgatctccactcgtgcggggtctctgggaatc
aatctggtcgctgcaaaccgggttgtggtgtttgatgcctgctggaatccgtcatatgac
atccagagcatcttcagagtctaccgctttggacagaaaaaaactgtatatgtgtaccgt
tttctggcccaggggacgatggaacagaacatttatgagcggcaagttgctaaacagtct
ctgtcctctcgtgttctggaccagcagcagattcagagacacttcacacacagtcagtta
agtgagctgtactgcttccggccagacctacggcccagtaaacacacagaaatgcctgtg
gatgacctgttggcccagctgctgcagagctgtgagcagctcatagtaagttatcatgag
cacaactcactgttagaccaccgggaggaagaggagctgagcgaggaagagcgcagagcg
gcctgggatgaataccgtgcagaaaagaaggcctctgtacagaactccaatgaacctgcc
cccaaaaacatcaaccagggattacagttctttcatcttcagcaggctctggcttctcga
aacttagcctttttaaccaacagtgttccttcaacaacttcattgcctgtgaaacaagcc
actggccaacgttctgctgcttggagcacatataacaacaccaacatctcatttcgactt
gagcaacccaatgtggtttcctcaggttcaaagacaaacacataa
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