Labeo rohita (rohu): 127165076
Help
Entry
127165076 CDS
T09007
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127165076 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127165076 (lig3)
Enzymes [BR:
lroh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127165076 (lig3)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
127165076 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
127165076
NCBI-ProteinID:
XP_050965321
LinkDB
All DBs
Position
5:11393586..11414612
Genome browser
AA seq
1010 aa
AA seq
DB search
MPSFWLGRAVRTLSRSSLPNLCWETSSRATLNHQSVQYSTLIFLRGFASSPSGIFFRVPQ
IRQFSLSSSSFFHVSWPERGSERPVMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGKI
VPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEEIQDEDKELINKHVS
ELAAKANATPKKKVQAKLNNSGQLSTPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPAK
PTQGSALSAQLCDPNHKDSLLREFRKLCALVAEKSGYNAKTEIIRDFLTKGSGGDKFRGD
LYLTVKLLLPGVIKNVYNLNDKQIVKLFSRILNCSQDEMVKDLEQGDVSETVRMFFEDSK
SFPPAAKSLLTIQEVDASLSRLAQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLKI
NSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSVEASLMTPVQ
PMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGSHFSYFSRSLKPVLPHKVAHFK
DFIPQAFPGGQSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFNG
VSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKDI
KGHYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESKK
WCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFVIRDPEKAPVW
EITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVTA
GPSKTSQNDKSSSGGESGGSSPSVSHGASTANKTKNGHTPKAKAVKTESPSSAVKRKLPA
EKQDAKKIKTEPVHSNGQSKLKTVQTTDPKNEKTLLDIFTGVKLYLPEAVQDFEKLRRYF
LAYDGDLVPEYDSASATHTLGEPEDNSSAQRVTSNWIWECIRKRRVVPPC
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcctagtttttggcttggcagggcagtgagaacactcagcagatcatctttgccaaat
ctttgttgggaaacttcatctagagcaacactaaatcatcagtctgtccagtattcgacg
cttatatttttgcggggctttgcgtctagtcccagtggcatctttttccgtgtgccgcaa
attcgccaatttagtctcagctccagctcttttttccacgtttcttggcctgagagggga
agtgagcgaccagtaatggcagagcagagatactgcgtggaatacgccaaacgtggcacg
gctggctgcaagaaatgcaaagacaagatcatgaaggggctggtccggattggcaagata
gtgccaaacccattcagtgagtctgcgggggaaatgaaggagtggtaccacgtgaaatgc
atatttgagaagcttgaaagagcacgcgccaccacaaagaaaatcgaagatattacagaa
ctggagggatgggaggaaattcaggatgaggataaagaactaattaataaacatgtgtca
gaactggcagccaaagccaatgcaaccccaaagaagaaagtgcaagcaaagttaaacaac
agtgggcagctgtcaacaccgctagctgatccaacagtcaatgctcctcgcaagttttcg
ggcttcacagctaccaaggccggttcctcttcctccagtcctggaccatctccagccaaa
cccactcagggtagcgctttatcagctcagctgtgtgaccccaaccataaagactctcta
ctgcgggagttccgcaaactttgtgccttagttgcagagaagtccggctacaatgctaag
acagagatcatcagagacttcttaacaaaaggctctggtggagacaaattccgaggagat
ttgtacctgacagtgaagcttctcctcccaggagtgattaagaatgtgtacaacctcaat
gacaaacaaattgtcaagcttttcagccgcatattgaattgcagtcaagatgagatggtg
aaagacttggaacagggagatgtttcagagacagtgcggatgttttttgaggacagcaag
tctttccctccagcagccaagagtcttctgactatccaggaggtggatgcttcattgagc
cgtctggcccaactcacaaaggaggacgatcagcaggcagagctgcaggacattgctaaa
aaatgtaccggaaatgatctgaagtgttacattcgtttggtcaaacatgatctgaagatc
aactctggggctaagcatgttttggatgctgtggaccccaacgcctatgatgccttcaaa
gcctcccgaaaccttggtgacgtaattgaccgagtgctacggaaccagcaggatgcttct
aatggaacagggcccagaaagatcctcagtgtggaggcatctctgatgacccccgtacag
ccaatgctggcagaagcatgcaagtccattgagtatgccatgaagaagtgtcctaatggg
atgtattctgagattaagtatgatggtgagcgtgtgcaggtccataagaacggcagtcac
ttcagttacttcagtcgaagtctcaaaccagtactcccacacaaggtcgcccattttaaa
gatttcataccgcaggcttttccgggtggccaaagcatgatccttgatgctgaagttctt
cttattgatacaaagaccagcaaaccactgccttttgggactcttggagtgcacaagaaa
gcagctttccaggacgctcaagtgggtctgtttgtgtttgactgcatttattttaatggt
gtcagtctcatggacaagcctctctgtgagagaagaaagtttctccatgacaatatggtg
gaagttcctaaccggattctgttttcagaaatgaagcatgtcacgagagctgctgacctg
gcagaaatgatcacacgggtcatcagagagggactggagggcttggttctaaaggatatc
aagggtcattatgaaccaggaaagcgccactggttgaaggtgaagaaggactatttgaat
gaaggagcgatggcagacactgctgaccttgtggtgcttggtgctttctatggcaaaggc
tcaaatggtggaattatgtccagtttccttatgggatgctacgacccagaatccaagaag
tggtgcactgtgaccaagtgttcaggaggctatgacgacgccaccttagccagactgcaa
aaggagttggacgtcatcaaaattggcaaggatccaagcaagatcccaggatggttgaag
attgtcaagaactattacccagatttcgttatccgagatccagaaaaagcaccagtttgg
gaaataacaggagcagagttttccaaatcagaaatgcacaccgcagatggcatatccatc
cgcttcccacgatgcactcgaatgcgtgacgacaaggactggaagaccgccactaacctt
cagcagctcaaggagctgtatcgtatttcaaaggagaactgtgattttgaggtaacagct
ggtccgtccaaaactagccaaaatgacaagagctcctcaggaggcgagagcggaggaagc
tctccttctgtgtctcatggagcttccacagctaacaagaccaaaaacggtcatactccc
aaagcaaaggcagtgaaaaccgaatcaccttcttcagcagttaagaggaaactacccgca
gagaaacaagatgccaagaagataaaaacagaacctgttcacagcaatggacaaagcaaa
ttgaagacagttcagacaactgacccaaagaatgaaaagacactactggacattttcaca
ggcgtgaagctctacctcccagaggcagtgcaggactttgagaagctacggcgctatttc
ctagcgtatgatggagatctggtgcccgagtatgactcggcttcagccacacacacattg
ggagagccagaggacaacagttccgctcagagggtcacctccaactggatctgggaatgc
atccgaaagaggagggtggttcctccctgctga
DBGET
integrated database retrieval system
