Labeo rohita (rohu): 127165296
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Entry
127165296 CDS
T09007
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165296 (zc3h12b)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
127165296 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
UBA_N4BP1_C
zf-CCCH_4
TNFR_ELAPOR1_6th
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
127165296
NCBI-ProteinID:
XP_050965691
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All DBs
Position
5:complement(33730949..33751873)
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AA seq
1020 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVSCSTAESSCESPNAGSSIIVNIEDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHRGCRDPQPLPAAAGHDSPEEEEEEDEEAGEDGSSSESDGEARSRSG
SSGGAISATSSGEGGTGRRQDPLTVTKPHRQLCRSSCLDRPSFSQSSTLQELRTDDTRSD
SSQRALAPPATSAQMSLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGSSALINDVLA
ELVRLGNKGDPESQTAAGTAGLMPRAVGAKEAVSPEASLEEDPSDTYDNLRPIVIDGSNV
AMSHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKE
KILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLL
MYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKY
YHPERANQPQRAVADELRAFAKLSAVKTMSEGALAKCGTSGSVSKGDSSSEAKRVAPKRQ
SDPSIRSVACEQEERLCPTRKAEANSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVP
GSLHFTHSSLEHAGSVQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTIS
LQDSFCSLEQPEPVGVGGGYPGRASMCPEPGRSHSSDSFSSYSGEMYLNSLEGSLDDSMK
GPPSQTQTQSSAQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLAPHTQHTVV
AARSSCPGDYPPLSQNVLPSASPSQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQ
HASWDPLPCGNEPYSYGSYGLTGGLMPCCERVMVRSMPEKMEQIWRSPWDSVPPPPPSAR
GPAEEPQERHPIPEHQYQTYRNLCNIFPAYVVHLVMEENPHMTDPQQLAAVIVTKLRSCH
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtccgagtgagctgcagcaccgccgagtccagctgcgag
agccccaacgccggctccagtatcatcgtaaacatcgaggacggcaaggaagaagattgc
actaaagctaaagagtacattgtgtcgttgatcagtcctgtgcataagcaccgtgagcgt
ttgactctttggctgcagcggcgactgcatgccctacgtgcagctattgagtacgaaagc
tgcgccgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcgcaggta
acagctgcatgcgctatgctgcagcgcctgaagatggagcatcgtggctgccgcgaccca
cagcccttgcccgctgccgccggccacgactctccagaagaagaggaggaggaggacgaa
gaagctggggaagacgggagcagttctgagagcgacggagaggcacggtcgcggagcgga
agttctggaggtgctatcagtgcaacaagctcaggagaaggagggaccggaagaaggcag
gacccgctcacagtaaccaaacctcaccggcagctatgtcgctcatcctgtttggaccgt
cccagcttcagtcagagcagcaccttacaggagctacgcacagatgacacccgctccgac
tcctcccagagagccctcgctccgcctgccacctcagcccaaatgtccttgcgtcaaacc
agcgatcgagattaccaaaccaaaatggactttgctctaaaactgggttattcgggagag
caagtggagtctgtgttgagtaaactggggtccagtgcactaatcaatgacgtgttggcc
gagctggtgcgactggggaataaaggagatccggagagccagacagcagcgggcactgct
ggtttaatgccacgggcggtgggagccaaagaagccgtaagccccgaggcatcactggag
gaagacccatcagatacgtatgacaacctcagaccaattgtgattgatggatccaatgtt
gccatgagccatggaaacaaagaggtgttctcatgcctgggcattcaactggctgttgat
tggttcctggagaagggccacaaagacatcacagtttttgtcccagcatggaggaaagaa
cagtcaagacctgatgcaccaatcaaagatcaggagatcctacggaaattagagaaggaa
aagatcctcgtcttcacgccgtctcgcagagtccaaggccggcgagtggtttgctacgac
gaccgctttatcgtcaagctggcctgcgactcagacgggatcattgtgtccaacgacaac
taccgggacttgcagaatgagaaaccggagtggaagaaatttattgaggaacgactcctc
atgtacagcttcgtcaacgacaagtttatgcctcctgatgatcctttaggcagacatggt
ccaagtctggaaaattttctccgcaaacgaccagtggttccagagcacaagaagcagccg
tgtccttatggtcagtacagcaaaagtaaaaagtgcacgtacggccataagtgcaagtac
taccacccggaaagagccaaccaaccacaacgggctgttgcagacgagctccgagccttt
gcaaaactctccgctgtaaagacaatgagcgagggagcacttgccaaatgtgggacctct
ggttctgttagcaagggagacagtagctcagaggcaaagcgagtggcacccaaacgccag
tctgaccctagtatccggtcggttgcatgtgagcaagaagagaggctctgtccaacgcgg
aaggctgaggccaattcggtaccgtctttagtttcagcgcttagcgttccaaccatgccg
ctgacgaaaagtcacgcagcaggcgctctgaatacgcgctcggcaagcagccctgttcca
gggtctctgcactttacccacagctcgcttgagcacgcgggcagcgtccagtatccccct
atcctagtcaccaatagccaaggtgcctccgtggcttacggtgagccgttccccaagtac
gactctgtggtaagtgaccatggctactattccatgctcagtgacttctccaccatcagc
ctccaagacagtttctgcagtcttgagcagccagagcctgtaggggtgggtggaggatat
cctggcagagccagcatgtgcccagaacccggccgaagccattcgtcggactccttctcg
tcctacagcggagagatgtacctcaactcattggagggcagcctggacgacagcatgaaa
ggaccaccttcgcagacccagacgcagtcttcggcgcaaacgcgccttcaagccttcgct
cacggtttccaccatgaggccttgacacgtgtgcagagctacggaacggatgaacccaaa
ccgggacctcgaaagcagtcctccgcccaccttgcaccacacacccaacacacggttgtt
gccgcccgatccagctgcccaggagactaccctcctctctcccagaacgtgttgccttcc
gccagcccctcgcagcagggtcgatccttaggcatgactcgaatggacagcatctctgac
tcacggctctacgagagcaacccgctgcgccaacggagacctcctctttgccgagagcag
cacgccagctgggaccctttgccgtgtggtaacgagccctacagttacggaagttacggt
ttaacgggaggccttatgccttgctgtgaaagggtgatggtccgcagcatgcccgagaag
atggaacagatctggaggtccccgtgggatagcgtgccgcctccaccgcccagcgctcgc
gggccagcggaggaaccccaagagcggcaccctattccagaacaccagtatcaaacatac
cgaaacctctgtaacatcttcccggcatatgtggtccatttggtcatggaggaaaaccct
cacatgaccgatccccagcagctggctgccgtcattgtcactaaattgcgttcttgccac
taa
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