Labeo rohita (rohu): 127165301
Help
Entry
127165301 CDS
T09007
Symbol
tnca
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127165301 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127165301 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127165301 (tnca)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127165301 (tnca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_2
EGF_Tenascin
Pur_ac_phosph_N
EGF
hEGF
Glyco_hydro_66
Motif
Other DBs
NCBI-GeneID:
127165301
NCBI-ProteinID:
XP_050965707
LinkDB
All DBs
Position
5:43039378..43110077
Genome browser
AA seq
2361 aa
AA seq
DB search
MGSGGLTFSCLVLATLMTLNHAGLVKKMIRQRREALTIPGIHNVTLPSSSQPVIFNHVYN
IKVPGSALCSVDLDSPAGLDLEQKDAPSGTEVTDHTLDGRNQIVFTHRINIPKQACGCTD
GLPDLKELLNRLEMLEGEVSTLREQCATETTCCSAQATGAIGTKPFCSGRGNYSTETCGC
ICEPGWKGPNCTVPDCPGDCSDQGRCVNGKCECFDGFTGEDCSVETCLVDCGENGRCVNG
VCVCNEGFSGVDCTETDCLNNCLGRGRCVDGECVCDEPWTGFDCSELICPHDCYDRGRCD
NGTCYCDKGFTGEDCGAIACPNDCSGRGFCIDGRCVCDAGYSGEDCSSLTCPNDCNQRGR
CFNGVCICEMGYFGEDCGKLSCPNNCNGRGRCIDGRCECDVGFQGHDCSEFSCPNDCNNR
GRCVNGQCVCEEGFGGEDCSIKTCLSDCYGRGQCVDGKCVCFADFTGEDCSELSCPSNCL
NRGRCVAGQCVCDEDFTGEDCSQRKCPNDCLGRGRCVDGRCVCQEGFEGLDCSIPTCPGN
CNNRGRCVNGKCVCDEGFVGDACGERSCPNDCNGMGQCVDGRCVCDEGYIGEDCSKVSPP
EDLTVTDVTTEKLNLTWRNKMLVTEYLVTYVPTSPGGLQMEFRVPGDRTSATVVELEPGI
EYLINVYAVLNNKKSVPVSARAATHLPQPDGLKFKSISDTSVEVLWDQLNFPFDGWEIIF
RNMKEENGKIVTNLPSSQTDFEQPGLGAGQEYEVTLSVIKNKTRGPKTSSTVVTRIDSPG
QIDVGDVTDRSAVISWSRPVAEVDGFKVSYGPSTDPSVHRDVDLPATDTQYSLEDLKPDT
EYKVSLSSKKGDVSSKPIFEGFTTGLDAPTDLKAVDQTDNSITLEWKNSRSTIDGYRIKY
GPIAGGAHGEDMFPRKAGDTTWATITGLKPGTEYGIGVTAVQNERESDPATTNALTDLDP
PRDLEVRDATETTLELVWKRPRAKISTYRLAFVSADGRREEVELPAATTTYALNGLNPGM
RYTVTLVAERGRRRSAPATVTASTASFTFYLANTFPEFGSAKGSDDNVISFVSLDNSEIP
FSGSGYEDPTGTLTVSNITSDGFDLAWESNKHVGYDSYTVELKDFSGKWKEEVHLHAEVN
DTKIRGLKASTEYQVRLYGISNNQRSSLLEAVAVTAPKSTSPDVVALTFKSVSTTLPSLH
TEVRPSVSTSTLLTEDFKAEVSGDELEGPTQGPPGDLNVTDVSRNSLRLSWSAPEGAFDS
FIVELNSTSNKSKDSVIEVSGEARQVHVDGLNPDTLYEITLYGMKEGEKSQPVSVHINTE
EQRPQIGSLSVSDVSWDSFNVSWTIEDGSAFDSFVIEVANSAGPERQNLSVSGDARSLWM
SGLSPDTSYIITLYGVHQGSILGSTYTQAATDSAPVVGNLYVSNITSESFSISWNDTRGD
IERFILEIIDSSWQREPVEYNLSHSTQSYEITGLRPTTDYIAYLTGVVKGRRTDSVSAVA
STVAEPDLSGLVVSNITSDTVSLSWRTGEKAFDNFIVEVRESALPTQATGRTLPGGVRST
VLTGLRGDTRYQIKLYATIGGSNTAALTTVVTTEPKPKLGPIAVSETRPHSLTLSWSTLS
GHFDGFAARVTDREQLYDVVELRLSGAERNVTITGLMDSTVYDILFYGLSRGRQTSSVSF
NTSTASLPKVEKLTVSDITPYGFRVSWATDSSESFSHFQVKVSDSGQLLEPQEFVVPGNQ
TVLDVLGLITGIGYEVSVTGVSGNGLQSRPITTVAVTEAEPEIEHLFVSDVTPESFRLAW
TAEDDVFDRFVLKVRDSRKLSHPREFVVPGDERTKVLTQLLGGTEYEIELYGVTLEHRSQ
PVTAVARTGLGALRDLRFSDITDTTAVVFWTLPRSQPDSYRITYIPVQGGTPMVLMADGS
QSQVSLTNLIPGETYQVSVVAVKGLEESEPVSNTFTTALDMPRSLTAVNVTDTKALLLWQ
PAAATVDGYVITYSADTVPPISEQVSGNTVEFEMSSLAPATQYTVNVYAIRNREKSAPAT
TDFTTDVDAPRDLAASNIQTDSAVLTWTPPRAAITGYILTFEASDGDVRELNLEPSATLH
SLSDLRSSTEYTIRLQAVFEDKRSKRISTVFTTVGMRYRNPKDCSEALMNGETSSGPYSI
YISGDEKQPVRVYCDMTTDGGGWMVFLRRHNGKVDFYRNWRNYSAGFGDANDEFWLGLLN
LHKITTAGQYELRVDLRDGQESVFAVYDKFYIADPRSRYKIQIGAYSGTAGDSLSYHQNR
PFSTHDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDSSHSKGINWFHWKGHEHSIP
FAEMKIRPVNFRNLEGRRKRS
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaggaggcctgacattcagctgtttggttttggcaaccctgatgactctaaat
cacgccggcctggtaaagaagatgataagacaacgacgggaagctctgacgattcccggc
atacacaacgtaacccttccgagctcttcccaaccggtcatttttaaccacgtctacaac
atcaaggttcccggtagcgctttatgctcggtggatctggactctcctgccggcttggat
cttgagcagaaggatgcgccatctggcacagaagtaacagaccacacattagatggcaga
aatcagatcgtcttcacccatcgcatcaacatccccaagcaggcgtgtggttgtacggac
ggactgccggacttgaaggagctcctgaatcggctggagatgttggagggtgaggtgtcg
acgctcagagagcaatgcgctacagaaaccacctgctgcagcgctcaggccacaggtgca
ataggaacaaagcccttttgcagcggccgtggaaactacagcacggagacctgcggctgt
atctgtgagcccggatggaagggccccaactgcacggttcccgactgtcccggagactgc
agcgaccagggccgttgcgttaacggaaagtgcgagtgtttcgatggcttcactggggaa
gactgcagtgtcgagacctgcctggttgactgcggtgagaacgggcgttgcgttaacgga
gtgtgcgtttgcaacgaaggcttctccggggtcgattgcacagaaacggattgtctcaac
aactgtttgggacgaggccgctgcgttgatggcgaatgtgtctgtgatgaaccctggacc
gggttcgattgctccgaactcatctgtccccatgactgctacgaccgagggcgatgcgac
aacgggacttgttattgcgacaaaggcttcaccggagaggactgcggggcgatcgcttgt
ccaaacgactgctcgggacgaggtttctgcattgatggccgttgtgtgtgtgacgccggc
tactccggcgaggattgttccagcttgacctgtccgaatgactgcaaccaaagagggcgc
tgtttcaacggcgtgtgcatttgcgaaatgggttatttcggagaggactgcgggaagctt
tcctgcccgaataattgcaacggtagagggcgctgcatcgacgggcgctgcgaatgcgac
gtcggattccaaggccacgattgttcggagtttagctgcccgaatgattgcaacaatcgt
gggcgctgcgttaacggccagtgtgtttgcgaagagggattcggcggcgaggactgcagc
attaaaacctgtctgtcggactgctatggccgaggccagtgtgtggacgggaagtgcgtt
tgctttgcagacttcaccggtgaagactgcagtgaattgagctgcccgagcaactgcctg
aaccgcggacgttgcgtcgcgggccagtgcgtttgcgacgaagactttaccggagaggac
tgcagtcagaggaagtgtcctaacgactgtctcggacgtggacgctgtgtggacggacgg
tgtgtttgccaggagggttttgagggcctggactgctccattcccacctgtcctggaaac
tgcaataaccgcgggcgctgcgtcaacgggaaatgtgtgtgtgatgagggattcgttgga
gatgcctgtggagaaagaagctgtccgaatgattgcaatggcatggggcaatgcgtggac
ggccgctgtgtgtgcgatgaaggctacattggcgaggactgctcaaaagtctcgccaccg
gaagacctgaccgtcacagatgtgaccacggagaagctgaacctcacatggaggaacaag
atgctggtgacggagtatttggtcacgtacgtcccgacgtcaccaggcggccttcagatg
gagttccgcgtgcctggagatcgtacgtctgctaccgttgttgagctggagccgggaatc
gagtatctcatcaacgtttatgccgtcctcaacaacaagaagagcgttcctgtcagcgcc
agagcggccacacatctgccgcagcctgatggtctgaagtttaaatctatcagtgatacg
tctgtggaggttttgtgggaccagctgaattttccatttgatggctgggagatcatcttt
cgtaacatgaaggaagaaaatgggaagatcgtgaccaatctgccatcctcccagaccgac
tttgagcagccaggacttggggcaggacaggaatacgaagtcactttgtcggtcataaag
aacaagaccagaggacccaaaacaagctcgactgtagtaacaagaatcgattctccaggg
cagattgatgttggcgatgtgactgaccggtctgcagtgatctcctggtccaggcccgtg
gctgaggtggacgggttcaaggtgtcgtacggcccgagcacagacccgtcagtccatcga
gatgtcgacctcccggccacagacacgcagtacagcctggaggacctgaaaccagacact
gaatacaaagtgtctctcagttcaaagaagggagacgtgagcagcaagcccatcttcgag
ggcttcaccacaggtttggatgcccccactgacctcaaagctgttgatcagactgacaac
agcatcacactggaatggaaaaatagccggtcaaccatagacggataccgtatcaagtac
ggcccgatcgcaggaggtgctcatggtgaagacatgttccctagaaaagcaggagacact
acatgggccacaattacaggcctgaagcctggaacggagtacggcatcggagttacagct
gttcagaatgaaagagaaagcgatccagcgaccaccaacgcactgaccgatctggatcct
ccacgggacctggaagtgcgagacgccaccgaaaccaccctggagctggtctggaagagg
cccagggccaagatctccacctacaggctagcgtttgtctctgccgacggccgacgggaa
gaagtcgagctgcctgctgccacaaccacctacgccttgaacggcttgaaccctggcatg
cgctacaccgtcaccctcgtggcagaacgcggacggaggagaagtgctcctgccaccgtc
accgcatccacagcatctttcactttttatctagcgaacacatttcctgagtttggctca
gccaaaggctccgacgacaatgtcattagctttgtgtctctcgacaactcagagatcccg
ttctctgggagcggatacgaggatcccactggcaccttgaccgtgtctaatatcacatcc
gatggatttgatctcgcgtgggagtcaaataagcacgttggctatgatagttacactgta
gaacttaaagatttctcagggaaatggaaggaggaggttcatctccatgcggaggtgaat
gacactaaaatccgtggcctaaaggcttccacagaataccaagtaaggctttatggaata
tccaataaccaaagatcttcactactagaagcagttgcagttacagcaccaaagtctacc
tctcctgatgttgttgctttgaccttcaaaagtgtttcaacaacgctaccaagcctccat
acggaggttcggccatcagtctctacctccactcttttaacagaggattttaaagctgaa
gtctcaggtgatgaacttgagggcccaactcaagggcctccgggtgacctaaatgtcact
gatgtgagcaggaatagcttgaggctgtcttggtcggctcccgaaggagcctttgatagc
ttcatcgttgagttgaactcaacgtcaaataagtctaaagacagcgttattgaagtgtct
ggagaagccaggcaggtccatgtagatgggctgaacccagacacgctttatgagattaca
ttgtatgggatgaaggagggcgagaaatcccaaccagtcagtgttcacatcaacacagag
gagcagaggccgcagattggcagtctgagtgtgtctgatgtgtcttgggatagcttcaat
gtgtcctggaccattgaggatggctctgcctttgacagttttgtgattgaagtggcaaat
tcagcaggtccagaaagacagaacctgtctgtatctggtgatgcacgtagtttgtggatg
tctgggctcagtcccgacacgtcctatataattacgttatacggagtgcatcagggctcg
atcctggggtccacctacactcaagcggctacagatagcgctccagtggttggcaatctg
tatgtttctaatattacatcagagagcttctccatttcatggaatgacacgagaggagat
attgagaggtttatcctggagattatagactctagctggcagcgggagccagtcgaatat
aatctgtcacacagtacacagtcgtatgaaatcactgggctacggccgactactgactat
atagcttacctcactggagtcgtgaagggaaggagaacagactccgtcagtgctgtcgcc
tccacagtggccgagcctgacttgtctgggctagttgtttcaaacattacctcagacaca
gtgtcgctctcctggcggacgggagagaaggcgtttgataattttatagtcgaggtgaga
gagtctgctttgcccacgcaggcgacggggcgcaccttgcccggaggtgttcgctccacg
gtgctgactggcctcagaggagacacgcgatatcagatcaagctgtacgccaccattggt
ggctcaaacacagctgccctgacaactgtagtaaccacagagcctaagcctaaactgggc
cccattgcggtgtctgaaacacggccgcatagcttgacgttgtcctggagcacattgtca
ggccacttcgatggctttgctgctcgtgtcactgaccgtgagcagctgtatgatgttgta
gagctcaggctgtcaggcgcagagaggaatgttaccatcacgggtcttatggactctacg
gtctatgatatattgttttatggtctgtctcgtggccgtcaaacttcatccgtttccttc
aataccagtacagcatcattacctaaagtggaaaagctcacagtttcggatattacccct
tacggatttcgggtgtcctgggcgacagattcttctgagagcttcagccattttcaggta
aaagtgtcggactctggccaactgctggagccgcaagagttcgtagtgccgggaaaccag
accgtgctggatgttttgggcctgattactggcattggctatgaggtcagtgtgaccggg
gtgtcagggaatgggttacagtctcgcccaatcaccacagtggctgttacagaggcagag
ccagagatcgagcacctttttgtgtcggacgtcacccctgagagtttccggctggcctgg
acggcagaagacgacgtctttgatcgattcgtgctcaaagttagagattcgagaaagctc
tcccaccctcgagagttcgttgttccgggcgatgaaagaaccaaagttttaacgcagctt
ttggggggaactgagtatgaaattgagctttacggggtcacgttggaacatcgctcccaa
cccgttactgctgttgccagaacaggccttggagctctacgggaccttcgtttctctgac
atcacggacacgacagctgtggttttttggactctaccacgatcccagccagactcctac
agaattacttacatcccagtccaaggaggtactcctatggtcctgatggcggacgggtca
cagtctcaggtttcgctgacaaatctgattcctggagagacgtatcaggtgtcagttgtt
gcagtgaaaggtctagaagagagcgaaccagtgtccaacacttttacaacagccctggat
atgccacgcagcctgactgctgtcaatgtcactgacacaaaggcgctgttgctgtggcaa
cccgcagccgcgaccgtagatggatatgtgatcacatacagcgcagacactgtgccaccg
atatcagagcaggtttctggaaacacagtggagtttgagatgagctcactggctccagca
actcaatacactgtcaatgtttatgccataagaaaccgagagaaaagtgctccagcgacc
acagacttcaccacagatgtggatgctccgcgtgatctggctgccagtaatattcagaca
gacagcgccgttctcacctggacgccgccgcgggccgccatcaccgggtatatcctgacc
tttgaagcgtctgacggggatgtcagggaactgaatctagagccgtctgcgaccttgcac
agtctttctgatctgagaagcagcactgaatacaccatcagactgcaggccgtctttgag
gacaagaggagcaaacgcatcagcaccgtcttcaccacagttggcatgcgctacaggaac
cccaaggactgctccgaagctctgatgaacggagagacgtcctccggtccgtacagcatt
tacatcagcggagacgagaagcagccggtccgtgtttactgtgacatgactactgatggt
ggtggttggatggtattcctacggcgtcataacggcaaggtggatttctacagaaattgg
aggaactactctgcaggatttggtgacgccaacgatgagttctggctcggacttttaaat
cttcacaaaatcacaacagccggtcagtacgagttgcgcgtggacctgcgtgacgggcag
gagagtgtgtttgctgtctacgataaattttacatcgcagatcctcgttcccgctacaag
atccagattggtgcatacagtggtaccgcaggtgattccttgtcatatcaccagaacaga
cccttctccacccacgacaatgacaatgacattgccgtcaccaactgcgccttgtcctac
aagggagcgttctggtataaaaactgccatcgagtgaacctgatgggaaaatatggagac
agcagtcacagcaaaggcatcaattggttccactggaaaggccacgagcattcgattcct
ttcgcggagatgaagatccggccagtaaatttcagaaacttggaaggcagacggaaaaga
tcatag
DBGET
integrated database retrieval system
