Labeo rohita (rohu): 127165336
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Entry
127165336 CDS
T09007
Symbol
thbs4a
Name
(RefSeq) thrombospondin-4a
KO
K04659
thrombospondin 2/3/4/5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04145
Phagosome
lroh04510
Focal adhesion
lroh04512
ECM-receptor interaction
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127165336 (thbs4a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
127165336 (thbs4a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
127165336 (thbs4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127165336 (thbs4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127165336 (thbs4a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127165336 (thbs4a)
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127165336 (thbs4a)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Phagocytosis
Opsonins
127165336 (thbs4a)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127165336 (thbs4a)
Exosomal proteins of colorectal cancer cells
127165336 (thbs4a)
Exosomal proteins of bladder cancer cells
127165336 (thbs4a)
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127165336 (thbs4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
EGF
cEGF
EGF_MSP1_1
Mis14
ERMP1_C
Motif
Other DBs
NCBI-GeneID:
127165336
NCBI-ProteinID:
XP_050965787
LinkDB
All DBs
Position
5:complement(15336229..15354202)
Genome browser
AA seq
955 aa
AA seq
DB search
MGSWPRIIFSLQLMLQLFNAVKTQGIVYDLLVSPDCLPDLLQGGIKAKNMNNVFILASLK
VQNKAPTRAFRIFNAMDNTDYFDFSIQGKQNKVVLKYLKSNGKVGTTSFAKVPLTDGKEH
YILLHFSGLQKGTPTTTLYVDCKLVERVQDVPQAFKSLPQGPKRITLKTLSTSNQDKLSD
LRLVLDESIDNVVELQDCNGPENSEHRDHRAQSEQMETLQLLGTTSKMEAGPMFELMRMI
QDLKQKVDQQTKETADLRKTILECVPCDAERNKAGLLDKKKAKCRPGVCFKPDMCTETAG
GVECAPCPEGYTGDGVHCDDVDECQFNPCFSGVRCINTAPGFRCEKCPRGYTGPEIQGVG
IDYAQTHKQMCNDIDECQMDNGGCTPNSYCHNTMGAFHCGICKTGFTGDQTSGCKDTGLD
TAAQTERLCGNGQPNPCDINAECVVERDGSISCVCQVGWAGNGYVCGKDTDIDAYPDSVL
KCRDGTCKKDNCKFVPNSGQEDADRDGKGDACDEDADSDGIFNDQDNCWLVSNIDQKNSD
KDLHGDACDNCKNVENPDQRDTDKDGLGDACDDDIDGDGLKNILDNCPLVPNPDQTDKDS
DGVGDACDSCPEVPNPNQSDVDNDLVGDTCDTNIDSDGDGHQNTKDNCPNIINSAQLDTD
KDGLGDECDDDDDNDGILDDQDNCRLVKNPDQKDENNDGVGDACTGDFDHDQVIDRIDTC
PENAEITLTDFRAYQTVVLDPEGEAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGV
DFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQAVPFRAVAEPGIQLKAV
KSNTGPGEFLRNSLWHTGDTNNQVRLLWKDPRNVGWKDKVSYRWNLKHRPQVGYIRVKFY
EGSELVADSGVVIDTSMRGGRLGVFCFSQENIIWSNLRYRCNDTIPEDYTEQSQQ
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttggccaagaatcatattcagtttacagttaatgttacaactcttcaatgca
gtgaaaactcaaggaattgtttatgatctactggtgtcaccggattgcctacctgacctt
ctgcagggaggaataaaggcaaagaacatgaacaacgtttttatccttgcaagcctgaag
gtgcagaacaaagctccgactcgtgccttccgcatcttcaatgctatggacaacacagat
tattttgatttcagcattcagggaaaacaaaacaaagttgttttgaaatatctgaaaagc
aacggaaaggttgggacaaccagtttcgctaaagtgccactgacagatggtaaagaacac
tacatactgcttcacttcagcgggctgcagaaggggacccccaccacaaccctctatgtg
gattgcaagctggtggagagagtgcaggacgtgccgcaggccttcaaatcactgcctcag
ggaccaaaacgaatcacgctcaagaccctgtcaacctcgaaccaggataagctgtcagac
ctcagactcgtacttgatgagtctattgataatgtggtagagcttcaggactgcaatgga
ccggagaacagcgagcacagggatcacagagcgcagagtgaacagatggaaacactgcaa
ctactaggaacgacttcaaaaatggaagctggcccaatgttcgagctaatgcgaatgatc
caagatttgaaacagaaggtcgatcagcagaccaaagaaaccgctgacctgagaaagact
atcttggagtgtgttccatgcgatgctgaacggaacaaagcgggactgctggataaaaag
aaggccaagtgcagacctggggtctgttttaagccagacatgtgtaccgaaaccgctgga
ggtgtggaatgtgcaccctgtcctgagggctacactggggatggagtccattgtgatgac
gtagatgagtgccagttcaacccatgtttctctggtgtacggtgtattaacactgcacca
gggttcagatgtgagaagtgtccacgaggctacactggcccagagatccagggtgtgggc
attgactatgctcagacacacaaacaaatgtgtaatgatattgatgagtgccagatggat
aacggtggttgcacacccaattcttactgccataacacaatgggtgcttttcactgtggg
atctgcaagactggattcacaggtgaccagactagtggctgcaaagacactggcctggac
actgctgctcaaactgaaaggctgtgtggaaacggccagccaaatccctgtgacatcaat
gctgaatgtgttgtggaaagagatgggagcatcagctgtgtgtgtcaagttggctgggca
ggaaacggctacgtctgtggaaaggacacagacattgacgcctatccagatagcgtactt
aagtgcagagatggaacctgcaagaaggataactgcaaatttgttccaaactcgggccaa
gaagacgcagacagagacggaaagggagatgcctgtgatgaggatgcagacagcgatggt
atcttcaacgatcaggacaactgctggttggtttctaacatagaccagaagaacagtgat
aaagatctccatggtgacgcttgtgataactgcaaaaacgtggagaaccctgaccagcgg
gacacagacaaggacgggctgggagatgcctgtgatgatgacatagacggagatggtttg
aagaacatcctggataactgtccgttggttcccaaccctgaccagacggacaaagatagt
gatggtgttggtgatgcatgcgacagctgccctgaggtgccaaaccccaaccagtctgat
gttgacaatgatcttgttggagacacttgtgacacaaacattgacagtgatggagatggt
catcagaacaccaaagacaactgccccaacatcattaacagcgcacagctggacactgat
aaggacggactcggagacgagtgtgacgatgacgatgataatgatggcatcttggatgat
caagataattgtagactggtgaaaaacccagaccaaaaggatgaaaacaatgatggcgtg
ggtgatgcctgcactggagactttgatcatgatcaagtgatagaccgaattgacacctgt
cctgagaacgcagagatcactctgactgacttcagagcctatcagactgtggttctggat
ccagagggagaggctcagattgaccccaactgggttgttcttaatcagggaatggagatt
gtccaaaccatgaacagtgacccaggactagctgttggatacacagcattcagtggtgtg
gactttgagggcaccttccacgtgaatacagtgaccgacgatgactacgcaggcttcatc
ttcggctaccaggattcctccagcttctatgtggtgatgtggaagcagacggagcagact
tactggcaggccgtgccctttagagccgtggctgagcctggcattcagcttaaggctgtg
aagtctaacaccgggcctggggagttcctgaggaattcactgtggcacaccggagacaca
aacaatcaggtgcgtctgctgtggaaagaccctcgtaatgttggctggaaggacaaggtc
tcctaccgctggaatctcaagcacagaccccaagttggatacatcagagtgaagttctat
gagggctctgagttggtcgcggactctggagttgttatagacaccagcatgagaggaggc
cgtctcggggtgttctgcttctcacaggagaacatcatctggtccaacctgagataccgc
tgtaatgacacaatccctgaagattatacagaacaatcccagcagtaa
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