Labeo rohita (rohu): 127165355
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Entry
127165355 CDS
T09007
Symbol
ncor1
Name
(RefSeq) nuclear receptor corepressor 1 isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
127165355 (ncor1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127165355 (ncor1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127165355 (ncor1)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127165355 (ncor1)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
127165355 (ncor1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
NCOR1_N
Myb_DNA-bind_6
DUF7952
LOB
Motif
Other DBs
NCBI-GeneID:
127165355
NCBI-ProteinID:
XP_050965826
LinkDB
All DBs
Position
5:20579451..20671986
Genome browser
AA seq
2446 aa
AA seq
DB search
MSSSGFPPSQGSFSSEQSRYPPHSVQYTFSSTRHPPEFPVPDYRTPLQDQQRRRPSLLSE
FHPGTERPPERRHGYEQQFHALPAQQEQEALEAKRPRIENVSETHFPRAQPTGIVLPPPQ
TIQDSIRTIGEVKKETQFSVKVEASSPGGVPQVGEDADTSPSKLSKEELIQSMDRVDREI
AKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVTPPPVEHKHRSIVQIIYDENRKKAEEAHK
ILEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHARKQREQKICQRYD
ELMTEWEKKVERMENNPRRKAKESRTREYYERQFPEIRKQREQQERFQRVGQRGTGLSAT
IARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDSEQRRVKFINMNGLMDDPMRVYK
SRQFMNVWTEHEKEIFKEKFVQHPKNFGLIASFLERKCVSDCVLYYYLTKKSQNYKTLVR
RNFGNRRRRNQQITRPSQEDKTDDKNEEDKAEKSEKKEDEEKKEEEEKDEKEDSKDISKD
KEKCEGEEEEGKEQSTPRGRKTANSQGRRKGRITTRSMANNEAASVVAEEPPPPPPEPVL
PEPTPPSKPEPVQKPVREPAKPSAAASAETRGAVEAGETSRWTEEEMEIAKKGLVEHGRN
WSAIAKMVGTKSEAQCKNFYFNNKRRYNLDNLLRQHKGSRRLRGNRDPSQSDPAPDDDEE
SDGPDNSSDTESAPSPSQTDPSKSDSLTHPNSALDGTSEQDVSATKGPVADAKGQEPPYS
ELRVKVEKSPEGGAGDGLPQDERTRSAYEMQIHPKSEPQDVEMTAPSSDRAQVQVKMEPE
VKDKEEKQGEQHHSDNDSSATCSADEDVEAEPDRQRVFSLEKPSLLGTAGSVVVSSAKLL
NVQQLQQRAATIPPMVSSHSLYPHLAFRYAPLDRDRAQPPRHVSAPFGHSGVPGGPLSGF
AMFQHQIKAVHESVQEDKQRLDQNESDRRLRVTTHSPTVVDREGKPFTYMPYDLKLMEQE
SHGGAGRPGSPYRLSPREPSKVSPQPDANNATRYSVPPVLQPAPNQTVQNLSDVRMFSRH
RPPNIPSPPPLIPTSKPTDKPSFIQGGSISQGTPGTYLPSQTHAVYVPEVVKTTGGSISL
GLPRQQDPAKPVSYIKQEECSPRGQSAQAEGLLSRAQYEGVVRAGPIQIPDMRGPPGKGQ
EGLTFRGGSITQGTPALNQSNVAADLLKGTIAKLATEDLSGPEKSRAEAHSKAHVIYEGK
SGHILSFDGQNQYCFLSAIKNPREGTRSPRMGHDLKRTYDIMEGSRGHQTREAAPYEGLI
SRALPSPHESKDRAILTGSIMQGTPRASSEVYDEASKYGKQIKRESPPIRSFEGGITKGK
PYDGVNTIKEMGRSIHEIPRKETQDSRKTPVLEGSITQGIPLKYESSPVNPSAIKHNVKS
LITSPVKISHSAIEAAERERAKYEDVKASERVRHTSVVNSTSVLRSTHTEAGKSQLSPGM
YEDSNARRTPTYSGTSISRGSPLLRGQDGSITTGKPASHERKNTLTPTQRDSVPAKSPVS
GGEQLGSHSPFDPHHRPVVPGEVYRTHLPPHLDPSLAFHHRVLDPAAYMFPRQPSPTGYP
NTYQLYTMENTRQTILNDYITSQQMQVIPRPDVTRGLSPREPSIAIPYPQARGIIDLAQM
PPTILLPHPGGTGSPSLDRITYIPGPQTPFPPRAFNPASISPGHPAHHSATAAIVERERE
NQREKERERERERERERERDQRDRERAAVEYMRGGSEQPGRPGSRSFLRSTSPSVRSQEG
VLQQRPSIFQGTNSKSVITPLMQMPSQAATAQASRYNNAADALAALVDAAASAPQMDVAK
VKESKHNNSSSRDDDVMPSRRSAQESQEVERRSVQSPYGDVSLPSGKASHPVYAEGGGAA
GSKDKPPPTKSRMEEELRTHGKTTITAANFIDVIITRQIAPDKDSRERGSQSSDSSSSMS
SSRFEAQGGIEVISPANSPALREEKNEGSFPSEKSSGLRFDINRFRQSGDAGPSAPQHPP
SSQADSYGHVPKTHRIMTLADHISHIITQDFAKSQDPPPSSSSLPSSSSSSSLSSTFQSS
GVGGVVGRVKPPNRYSPENPASTAHHQRPPSRVSPENSSDKPRARPGRSPDRGRGPENYE
PISPPQGYSGLDKQEASVLQSQRREQDLPEQRTDSRSPGSSSYLPSFFTKLESTSPMVMS
KKQEIFRKAEVGNAQPGTEIFNLPAVTTSSSVNPRNHSFSDPASNLGLEDIIRKALMGNM
EEKQEDQQQQQAQLGTGSTSGSMSNISDSRQEASPSPNTAGKQKLQSKANSRKSKSPNPG
QAYSVGERPSSVSSVHSEGDYHRQAPTWAWEDRPSSTGSMQFPYNPLTMRMLSSTPPTSM
ACPSPSMQSQQQPQGGASGPVAPTRAWEREPPLLSEQYETLSDSDD
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atgtctagttcaggatttccccccagccaggggtccttcagcagcgagcagagccgttac
ccacctcactcagtgcagtacaccttcagctccacgcgacaccctccggagttcccagta
cctgactaccgtacccccctgcaggaccagcagcgccgcaggccttccttactatctgaa
tttcaccctgggaccgagaggccgccggagcgcagacatggttatgagcaacagttccat
gccctcccagctcagcaggagcaggaggctctcgaggccaagcgtccccgcatcgagaac
gtatctgaaactcattttccaagagctcagcccaccggcattgtactgccccctccacag
accatacaggacagcatcaggaccattggagaggtcaagaaggaaacccagtttagtgtg
aaggtggaggcctcgtccccaggtggagttccacaggtgggtgaggatgcagacacatca
ccctccaaactctccaaggaggagttgattcagagcatggaccgcgttgaccgtgagatt
gccaaggtcgagcagcagattttcaaactgaaaaagaaacagcaacaactggaggaggag
gcagcaaagccggtagagccagaaaagccagtgacgccgccccctgtggaacacaaacat
cgcagcatcgtccagatcatttatgatgagaaccggaaaaaagcagaagaagcccataaa
atactggaaggattggggcctaaagtggagctgcctttgtacaaccagccctctgatact
aaggtctaccatgacaacataaagacgaatcaggtgatgaggaagaagctgattctgttt
ttcaagaggagaaatcatgcacgcaaacagagagagcagaaaatttgccagcggtatgat
gagctgatgacggagtgggagaaaaaagttgagcgaatggaaaacaacccacgccgtaaa
gccaaggagagccgcacacgtgaatactacgagaggcagtttcctgagatccgcaaacag
cgtgagcaacaggaacgcttccagagggttggccagagggggacaggcctgtctgccacc
atcgcaagaagtgaacacgagatatccgagatcattgacggcctctcggagcaggagaac
aatgagaaacagatgaggcagttgtccgtcattcctcccatgatgtacgattccgaacag
cggagagtgaagttcatcaatatgaacggtctgatggatgacccgatgagggtctacaaa
tcccgccagttcatgaatgtctggaccgaacacgagaaggagatcttcaaggaaaagttt
gtgcagcatccaaaaaactttggtctgattgcttcatttctggagagaaagtgtgtgtct
gattgtgtgctgtactattatttgactaagaagagtcagaactataaaactcttgtcaga
cgaaattttggaaatcgacgacgaaggaatcagcagataacgcgaccttcacaggaagac
aagacagacgacaagaacgaagaggacaaagcggagaaatcagagaagaaagaggacgag
gagaagaaggaagaggaggagaaagatgaaaaagaggactctaaggacatcagtaaagat
aaagagaagtgtgagggagaggaggaggagggtaaggagcagagcacaccacgcggccga
aagaccgccaacagccagggccgtcgtaagggccgtatcaccacccgctccatggccaat
aatgaggctgcatctgtggtggctgaggaaccacctccacccccacctgaaccagttctc
ccagagcccacacccccctctaaacccgagccagtacagaaaccagtgcgagagcctgcg
aaaccctctgctgcagccagcgcagaaacacgaggcgcagttgaagctggagagacgtcg
cgctggacggaggaggagatggagatcgccaaaaaaggactggttgaacatggtaggaac
tggtcagccattgctaagatggtaggcacgaagagtgaagctcagtgtaagaacttttac
ttcaacaacaagagacgatacaacctagacaatctactacggcaacacaagggttcccgg
cgactccgtggaaatcgagatccatcacagagcgatcctgcgcctgatgacgacgaggag
agtgatggtcccgataacagttcggacacagagagtgcgccttctccatctcaaactgat
ccctccaaatccgactcgctaactcatcccaactcggctctggacggcacgtcagagcag
gacgtctctgcaaccaaaggcccagtggcagatgccaagggccaggagcctccatacagc
gagctacgggtgaaagtagagaagagtccagaaggaggagctggagacgggcttcctcag
gatgagcgcacacgctcggcatatgaaatgcagatccatccgaagagtgagccgcaggat
gtggagatgaccgctccgagcagcgacagagcgcaggtgcaagtgaagatggagccggag
gtcaaggacaaggaggagaaacagggggagcagcaccactccgataatgactctagcgcc
acctgcagtgcggatgaggatgtggaggctgaacctgaccgacaaagagttttctctctg
gagaagccgtcattgcttggtactgcaggctcagtggtcgtgtcctcagccaaactcctc
aatgtgcagcagctacagcagcgggccgccaccatcccccctatggtcagttcccatagc
ctctacccccacttagcattcagatatgcccctctggacagagacagggcccagccaccc
cgccacgtttcagcaccattcggtcacagcggcgtacccggaggaccgttgagcggcttt
gctatgttccagcaccaaatcaaagctgtacatgagtccgtgcaggaggacaaacagaga
ctggaccagaacgagtctgaccgcaggctgcgagtcactacccacagccccactgtagtg
gaccgagaaggtaagccgttcacctacatgccgtatgacctgaagctgatggaacaggaa
tctcacggtggagctggtagaccaggctctccgtacagactttctcctcgcgagcctagt
aaagtctcaccccagccagacgccaataatgccacccgctacagtgtacctccagttctt
cagccggcaccaaaccagacggttcagaatctttcagacgttcgcatgttttcccgtcac
aggccgcccaacattccgtctcctccgcccctcattcccacctccaaacccactgacaag
ccctccttcatacaggggggctccatttcacagggaacgccaggaacataccttccttct
caaacgcacgccgtgtacgtaccggaggttgtcaagaccacaggagggtccatctcactc
ggtttgccaagacagcaggaccctgccaaacctgtgtcatatattaagcaggaggagtgt
tctccacgtggacagagcgctcaggcggagggcctgttatccagagctcagtatgaggga
gtggtccgagcaggacccatacagattccggacatgagagggccacctggaaaaggccaa
gagggcttgactttcagaggaggctcaattacacagggcactcctgccttaaatcagtcc
aatgtagcagcggatctgctgaaaggcactattgctaaactggccacggaggacctgagt
ggcccggaaaagagccgagctgaagcccattctaaagctcacgttatctacgaaggcaaa
agtggacacatcctgtcttttgacggtcagaaccaatactgcttcctgtctgccattaag
aacccgagagagggcacaagaagtccacgaatggggcacgatctcaaacgcacatatgac
atcatggaggggtcccgtggacaccaaacacgtgaggcggcaccttatgaaggtttgatc
agcagagcattgccgagtcctcatgagtctaaggatcgagcaattctcactggatccatc
atgcaaggaactccaagagcctcatctgaagtctatgatgaggcctccaagtacggtaaa
cagatcaagagggaaagtccacccatacgctcttttgagggaggcatcacgaagggtaaa
ccatacgatggagtgaacaccataaaggagatgggtcgctcaattcatgagattccccgt
aaggagactcaagatagccgtaaaacacctgttctggaaggatccattactcagggtatt
cctctgaagtacgagagcagtcctgtgaacccgtcagccatcaagcacaatgttaaatct
ctgatcacaagcccagtgaagatctcacactctgccattgaggcagctgagcgcgagagg
gccaagtatgaggacgtgaaagcatctgaacgtgttcggcacacctctgtagtaaactcc
acatctgtcctgcgctccacacacacagaagcaggaaaatctcagctcagtccaggcatg
tatgaggacagcaatgcacgcagaacccctacatacagtggcacctccatatccagagga
tcacctctgctacgagggcaagacggaagtataacaacaggtaaaccagcttctcatgag
aggaagaacacactgactccaactcagagggacagtgttcccgccaagtcacctgtgtcc
gggggtgaacagcttggatctcacagcccgtttgacccccaccatagacctgtggttcct
ggagaggtgtatcggactcacctaccaccacacctggaccccagcctcgcttttcaccac
agagtcctggacccagcagcgtacatgttcccacggcaaccgtcaccgaccggttacccc
aacacttaccagctgtacaccatggaaaacactcggcaaaccattctgaatgattacatc
acctcgcagcagatgcaggtcataccacgccctgatgtcacgaggggactgtcaccacgg
gaaccgtccattgccatcccatacccacaagctagaggaataattgatctagcccagatg
ccacctaccatcctgttacctcaccctggggggacaggttccccctccctggaccgcatc
acctacatccctggacctcagacccctttccctcctagggcattcaaccctgcctccata
tctccaggacatcctgcccatcatagtgccactgcagctattgtggagagggagcgagag
aatcagagagagaaggaacgtgaaagagagagggaaagagagcgagagcgagaaagagat
cagagagaccgggaacgtgcagcggtagaatatatgcgtggaggctctgagcaacctggc
cgaccaggcagccgaagttttctgcgttccacttcaccctctgtgagatcacaagagggc
gtccttcaacagcggccgagcatcttccagggcaccaactccaagagcgtcattacacca
ctaatgcaaatgccctcacaagcagctacagctcaagccagccgatacaacaatgcagct
gatgctcttgctgccttggtggacgctgctgcttctgccccgcagatggatgttgcgaaa
gtcaaggagagcaagcataataacagcagctcccgggatgatgacgtgatgccatcacga
cggtcagcacaggagtcgcaagaggtggaacgccggtccgtgcagtcaccatacggggac
gtgtcacttcctagtgggaaagcttcccatcctgtgtatgcagagggtggaggagctgca
gggagcaaagacaaacccccacccaccaagtcacgcatggaggaagagctgcgcacacat
gggaagaccaccataactgctgcaaattttattgatgtcatcatcacacgacagattgcc
ccagataaggactcccgtgagagaggctcgcagagctctgactcctccagcagcatgtca
tccagtcgttttgaagctcaaggtggaattgaggtgatcagccctgccaactctccagcc
ctgagagaagagaagaacgaaggttctttcccatcagaaaagagttcaggattaaggttt
gacattaaccggttcaggcagtcaggagatgcaggaccttctgcacctcaacatcccccc
tcctcacaagcagacagttacgggcatgtcccgaaaacgcaccgcatcatgacccttgct
gaccacatctcgcatatcattacgcaggactttgccaagagtcaagatcctcccccatca
tccagctcgctgccttcctcatcgtcgtcgtcctcactctcctccacattccagagctct
ggtgtgggaggtgttgtaggtcgagtcaaaccccctaaccgctacagcccagaaaaccca
gcttccactgcacaccaccagagaccaccaagcagagtatctcccgagaactcctcagat
aaaccaagagccaggcctggtaggtctcctgatcgaggacgaggaccagagaactatgag
cccatctctcctcctcagggttattctgggttagacaaacaggaggccagtgtgctgcag
agtcagagacgagagcaggatctccctgaacagaggactgactcgcgttctccaggcagc
agcagttacctgccttcattctttaccaaactggagagcacatctcctatggtaatgtcc
aaaaagcaggagatcttccgcaaagcagaagttggtaatgctcagccaggcacagagatc
ttcaatctcccagcagtaacaacttcaagcagtgtaaaccctagaaaccactcgtttagt
gatccagccagcaatctgggtctggaggacatcatcaggaaggctctgatggggaacatg
gaggagaagcaggaggaccagcagcagcagcaggcccagctagggacaggaagcacctca
ggcagcatgagcaacatttcagacagccgacaggaggccagcccatcccctaacacagca
ggaaagcagaagcttcagagcaaagctaacagcaggaaatcaaagtctccaaacccaggc
caggcgtactctgtcggagagcgtccctcttctgtgtcctctgttcattcggagggcgat
taccacagacaggctcccacctgggcttgggaggaccggccgtcgtccacaggttccatg
cagttcccttataaccccttgacgatgcgcatgctcagtagtacccctcccacctccatg
gcctgcccgtctccctccatgcagtcccagcagcagccacagggtggcgcctctggcccc
gtagctccgacgcgcgcttgggaacgagagccaccgctactgtcagagcagtacgagacc
ctctcggacagcgacgactga
DBGET
integrated database retrieval system
