Labeo rohita (rohu): 127165497
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Entry
127165497 CDS
T09007
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165497 (zc3h13)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
127165497 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
127165497
NCBI-ProteinID:
XP_050966131
LinkDB
All DBs
Position
1:complement(29856594..29879756)
Genome browser
AA seq
1785 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSSTTTPSRRPSVFERLGPSTASNAAETHCRNWLKTGNCSY
GNTCRYTHGTPSRGKGFSGTFNRSAERPTGDLRERMKNKRQDVDGDTQKRDTDEPTSPTT
RQRDSSRGRHREKEDIKITKERTPASEEETADWEASREDSDNGDYDYELSLEMKRQKIQR
ELMKLEQENMDKREEIVIKKEDPVPKTRTSNTSKDRASPERSSSKGSPSSRKSSSPKHRA
GKGGNSSKKEKKSSTSSVISSPVSDQTRAEETESRSSKGGHGKRKGPRTPSPPPPVPVEN
PVSGKKHKNKHKNKEKCEDKPKEGKERGRDTEKHKEKKEKRRDRSDSSHKAKRSVTSEER
SGSLSPPSREASPPARRRSSSPKPTSQKQSSQQRSRTPPRHRRSPSPPSRQHHSPSSRSG
SSAQRHSPSPRHRRGSISPLYRDLPPPSSSSPPPTQSSRRSRSPLTPQRDPSPTPAPRRS
SPSARHRSQGRERERGRAERDRSPTLQERRHERRDESRGKREKDSSRDERDYEIEQSSSR
DDRDARDVRDRRGERDRRDVREERQHRGEVKDTRDTRAGEMRDRSGRESLEHRERDRDRE
RERERERERERNEPHRKEETTAQEERNYGRGHGREELRNDRVDNRNECRVERTGRGRGHG
SDVTEKVSARGGRASQADTSSASGHDSWESRSSGLRERSSERNTDRDRYDNDRQRGEQPR
DERRGGHAERDRRDNREREQRAPSPVRQQNRGEDLDREERRDDRRNDRGDDRRDDRTRER
EKDRDREREREREREKEREREKEREREAERERERAREREREREREREREREREERERERE
REREEREREREEREKERERERKEREREREQRERERQREWDEREKGREERRDRRDESRDER
STRDAHEERKNTRKRHRPENTPSPRPSPKRGRDVSPADSDGYNSTEEKGEKHRLLSQVVR
PQEPARSPVRSFTDDKHNRWKDDDRRGDKKEGRGRHEEVDSRGERGAGRGAERRGEHVPD
ISATGVSDSRRAKEQRDLPAAALTPPPPSIEDRDSLSAVHEEGKKKTKSQKKNLKKNRKE
EESGGGDRSNPEPPSSSSVAEAPQALLSPRKTAKKKALERKRKRSRGPESDVSEDELVAQ
HPLSKRRRGPRTPPPINKDDLPSQRALTAGQSSLSAKIDPNFSDWSDEDVPERGETSSAS
LPSDRPPERMLPSERPPRRGARGGGRDRTDPPIAPLLPDPPMLIQSLPLQPLLPQHMLRK
PQQADMQQQRSSSMGSNQSRASSRRLRSPSNESAHRDEGPQGLRARRGLMQGGNSRERER
ERERERDRERERERERDRERAAASEQMGGERRSRIDQLRRGEPSRSTSSDRQDSRSHSSR
RSSPESERQARSRAGSYDSRERDRERERDRDQLDREREKKDHRQLQNQQTQQRDWDPEPR
EWGGRGREPLLRGNREPIRERDLREMRERERLLPEGLLAHERMDRERGERDRERERERML
PFDLQAHREPKSKSETKMERGEYEPLLPREALMDVDKPADNTHLQGEASEPKMDSLDEEE
DGKGDDAQSAVSGGEEYEPISDDELDEILADSQKRDEQQDDEKISGPLDVIDVDWSSLMP
KQKQEPRASGAALLRFTPGAVLLRAGVSRRLAGPQFLARVKEVCSRELEDPKDADKLLEH
DLGALNMAAYNRRMERANLLRSLGPCCKALCARRDIAIRRQLLKNDKGTTKQIYTSAPVV
DNELVQLSLRLFKKKMASSLSSGQEKTDSASAAQQLSTPTELCVS
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatcaggcggaaggttacagtggagaattcgaagaccatatcggacagcagc
agtagcacgaccaccccctcccgcaggcccagcgtgtttgagagactcgggcccagcacg
gccagtaatgcagcagagactcattgtagaaactggttaaagactgggaactgcagttac
ggtaacacgtgtcgatacacacatggaaccccatcacgaggaaaaggcttttctggaacg
ttcaacaggtcagccgagaggcccactggggatctccgggagaggatgaagaataagaga
caggatgtagatggtgacactcagaaaagagatacagacgagcccacttcacccacaacc
agacagcgagattcatccagaggcagacacagagagaaagaagatattaaaatcacaaag
gaacgcactccagctagtgaggaggagaccgcagattgggaagccagtcgtgaagattcc
gataacggtgattacgattacgagttatctcttgagatgaagagacagaagattcagcgt
gagctgatgaagctggaacaagagaacatggacaaacgagaagagattgtcatcaagaaa
gaggaccctgttcctaagaccaggaccagtaatacttctaaggacagggcttcacctgag
cgcagcagttctaaggggtcaccctcgtcccgtaaatccagctcacccaaacatagagca
gggaagggtgggaactccagcaagaaagagaagaagtcctccacttcctcagtcatctcc
tctccagtgtctgatcagaccagggcagaggagacagaaagcaggtcatctaagggtggc
catggcaaaagaaaagggccacgaacgcccagtcctcctccacctgtccctgtggagaac
ccagtttctgggaagaaacacaaaaataaacacaagaacaaagagaaatgtgaggacaaa
cctaaagaaggcaaagaacgaggacgagatacggagaaacacaaagagaaaaaggaaaaa
cgcagggaccggtcagatagttcccataaagccaaacgctcagtaacatcagaggaacgt
tctggaagtctttccccaccctcaagggaagcatcacccccagccagaaggaggtcatcc
tcccctaaacccacttcccaaaaacagtcctcacagcagaggtctagaactccaccccgt
caccgccgcagtccctcacctccctcccgacagcaccactcaccgtcttcacgctctggc
tcctctgcccagagacactccccatctcctcgccacagacggggttccatctctcctctt
taccgagaccttcctcctccgtcttcatcctctccacctcctactcagtcctcacgtcgc
tcccgctctccgctcaccccgcagagagacccttcaccgacacctgcccctcgcaggtcc
agccccagtgcccgtcaccgctcccagggcagagagagggaaagggggagagcagagcga
gataggagtcccacactgcaagagagacgacatgaacgcagagacgagagccgtggaaag
cgtgagaaagacagcagccgtgatgagcgagattacgagattgagcaaagctcttctcga
gatgaccgtgatgccagggatgtccgagaccgtcgtggtgaacgggatagacgagatgtc
cgggaagagcgccagcaccgtggggaggtcaaagacactcgggatacccgtgcaggagaa
atgcgagaccgctcaggacgagaatccctggagcatagagagagagaccgggaccgggaa
agagagcgagagagggaaagagagagagaacgaaatgaaccccatagaaaggaggaaaca
acagcccaggaggaaaggaattatggaagaggacatggaagggaggaattaagaaatgac
agagtggacaacaggaatgaatgtcgagttgaaagaacaggcagaggaaggggccatgga
tcagatgtcacagagaaagtttctgctcgtggtggtagagcttcacaggctgacactagc
agtgctagtgggcatgatagctgggagtcccgcagcagtggtctgagagagaggagctca
gagagaaacactgatcgtgatcgctacgataatgacagacagagaggggaacagccaaga
gatgaacggcggggaggacatgcagagagagaccgccgtgacaacagagaacgagaacaa
agagcgccctctcctgtccgccagcaaaaccgtggtgaggaccttgatcgtgaagagagg
agagacgatcgaaggaatgatcgaggggatgacagacgagatgaccgcacccgtgagaga
gagaaggacagggatagagaaagggagagggaacgggaaagagagaaagagagggagagg
gagaaagaacgggaaagagaggctgaaagagagcgtgaaagagcaagggagagggagcgg
gagagagagagggaaagagagcgagagagggagagggaggagagggaaagagagcgggaa
agagaaagggaggagcgggaaagggagcgagaagaacgcgagaaagaaagggaacgagag
aggaaggagagagaacgggaaagggagcaaagagagagggaacggcagagggagtgggac
gagagagaaaaagggagggaagagaggcgggaccgaagagatgagtcacgagatgaacga
tccacccgagatgctcatgaagagagaaagaacactcgtaagagacatcgtcctgagaac
actcccagtccacggccgtctcctaaaagagggcgagatgtgagccctgcagacagtgac
ggttacaacagcactgaggagaaaggtgaaaagcacagactgttgagtcaagtggttcgt
cctcaagagcctgcccgctcgcctgtccgctcctttactgatgataaacacaaccgctgg
aaggatgatgatcgccgtggggataaaaaagaaggccgtggccgacacgaggaggtggat
tcccgcggtgagagaggagcaggaagaggagcagagcgacgtggagaacacgttccagac
atttctgctacaggcgtttctgactccagaagggcaaaagagcagagggacctgcctgct
gctgccctcactcctcctcctccttccatagaggacagagactctttatcagctgttcat
gaagaggggaagaaaaagactaaatctcagaagaaaaatctgaagaagaaccgaaaagag
gaggagtctggaggaggggaccgtagtaaccctgagcccccctcctcctcctctgtagct
gaagcccctcaggctctcctctcacctcgcaagacagccaagaagaaagccttagagagg
aagcgcaagcgctccagaggtcccgagtcggatgtttctgaggacgaactggtcgcccag
catcccctcagcaagaggcgacgaggcccacgtacacctccgccaatcaacaaggatgac
cttccctcccagagggctttaacagcaggacagagttccctctctgctaaaatagatcct
aacttcagtgactggtctgatgaggacgtaccagagcgaggcgagacctcctctgcctcc
ctgccttccgataggcctccggagcggatgcttccctctgagcgtccccctagaaggggt
gcacgtggtggcggccgggaccgtacagacccccctatagccccgctgctccctgaccct
ccaatgctgatacagtcgcttcctttacaaccgctactgccgcaacacatgctgcgtaaa
ccacagcaagcagacatgcagcagcagcgcagcagtagcatgggcagcaaccaaagccgt
gcgtcttcgagaagactacgctcaccctccaatgagtcggcccaccgtgatgaagggcct
cagggacttagggcccgcagaggactcatgcaaggtggcaattctcgggagagggagaga
gagcgagagagggaacgggacagagagcgggaacgagagagggagagagatagagagagg
gcagcggccagtgaacagatgggcggagagaggaggtcgaggattgatcagctccggaga
ggagaaccaagtcgaagtacttcctcagaccgtcaggactcccggagtcacagttctcgt
cgtagttcaccagagtctgagcgtcaggctcgctccagagccggctcctacgacagccgt
gagcgtgaccgagagcgtgaacgagatcgcgatcagttggatagagagcgtgagaaaaag
gatcaccgtcagttgcaaaatcaacaaacccaacagcgagactgggacccagaacctcgt
gagtggggtgggcggggcagagagcccctcctccgtgggaaccgtgagccaattagagag
agagacttgcgggagatgcgtgaaagggaacgactcttacctgaagggttgctggcacat
gagcgaatggatcgtgagcgtggtgaaagggaccgtgagcgtgaacgggaaaggatgctt
ccgtttgatcttcaggctcacagggaaccgaagagcaaatctgaaactaagatggaaagg
ggagagtatgaacctctgttacccagagaagccctcatggatgtagataagccagcagac
aacacacacctgcaaggggaagcatctgaaccgaaaatggatagtcttgatgaagaggag
gatggaaaaggggatgatgcacagtctgctgtctctggtggtgaggagtatgagccaatc
agtgatgatgaactggacgagattctggctgacagtcaaaagagagacgaacagcaagat
gatgaaaagatttctgggcctctagatgtgattgatgtagattggtccagtttgatgccc
aagcagaaacaggagcccagagcttctggggcagcactgctccgattcactccaggggcc
gtgttgctcagagcaggagtgtccagacgcttagctgggcctcagttccttgccagagtt
aaagaagtgtgttccagagagttggaagaccctaaagatgctgataaactcttagagcat
gatctgggtgctctgaacatggctgcatataacagaagaatggagagggccaacctactg
aggagcttgggcccttgttgcaaggcactgtgtgctcgcagagacattgccatacgtaga
cagctcctgaaaaatgacaagggcacaaccaaacagatctacaccagcgcgccagtggtg
gacaatgaacttgtgcaactgagtttacgtctctttaaaaagaaaatggcttccagcctg
tccagtggacaggaaaaaactgattcagcctctgccgcccagcagctcagcacaccgacg
gagctgtgcgtctcctga
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integrated database retrieval system
