Labeo rohita (rohu): 127165724
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Entry
127165724 CDS
T09007
Symbol
tia1
Name
(RefSeq) nucleolysin TIA-1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165724 (tia1)
03041 Spliceosome [BR:
lroh03041
]
127165724 (tia1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127165724 (tia1)
Spliceosome [BR:
lroh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
127165724 (tia1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Calcipressin
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
127165724
NCBI-ProteinID:
XP_050966556
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Position
5:complement(9071192..9081018)
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AA seq
386 aa
AA seq
DB search
MMDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHA
AASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
ATYETNAKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEIRVFPDKG
YSFVRFNSHESAAHAIVSVNGTSIEGHIVKCYWGKETTDMVSPMQQVQVPQQNKVGFAAQ
PYGQWGQWYGNAQQISQYVPNGWQVPTYGVYGQAWNQQGFNHIQAGAGWPGVSAVSNGGV
VEPAQGVNGTVLANQSSMGTAGYHTH
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgacgagcaacccaagaccctgtatgtaggaaacctgtcacgggatgtgacc
gaggcccttataatgcagctctttggtcaaattggcccctgcaagagctgtaaaatgatt
gtggatacggcaggtaacgatccatactgttttgtggagttcttcgagcataggcacgca
gcggcctcactcgcagctatgaatgggcgtaaaataatgggtaaggaggtaaaggtcaac
tgggctacatcacctagcagccagaaaaaagacacaagcaatcacttccatgtctttgtt
ggagaccttagtccagaaatcaccactgatgacatcagagctgcctttgcaccctttggg
aggatatcagatgcgcgcgttgtgaaagacatggcaacggggaagtcaaaaggctatggt
tttgtttcattcttcaacaaatgggatgcagagaatgccatccagcaaatgggaggtcag
tggttgggtggcaggcagatcaggactaactgggctacaagaaaacccccagcacctaaa
gcaacctatgaaacgaatgccaagcacttgtcgtttgatgaggtggtgaaccagtccagc
cccagcaactgcactgtgtattgtggcggcgtcactacaggccttacagaacaactcatg
agacagaccttttccccatttggccaaataatggaaatccgagtgttcccagacaaaggc
tactcgtttgtgaggttcaactctcatgaaagtgcagctcatgcgatagtgtctgttaat
gggacgtccatagaaggtcacatagtgaaatgttactggggtaaagagactacagacatg
gtgagccccatgcagcaagtgcaggtaccccagcagaacaaagttggttttgctgcacaa
ccatacggccagtggggacagtggtacggcaacgcacaacaaattagtcagtatgtccct
aacggctggcaggtacccacttacggcgtgtacggacaggcctggaaccagcagggcttc
aatcacatacaggctggtgccgggtggcccggtgtgagtgccgtgagtaacggaggcgtg
gtggagcctgcgcagggagtcaacgggaccgtgctagccaaccagtccagcatgggcact
gcaggataccacacacactga
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