Labeo rohita (rohu): 127165857
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Entry
127165857 CDS
T09007
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
lroh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127165857 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127165857 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127165857 (sympk)
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127165857 (sympk)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127165857 (sympk)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
127165857 (sympk)
U7-dependent histone pre-mRNA processing factors
127165857 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
GNC1_N
V-ATPase_H_C
Cohesin_HEAT
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
127165857
NCBI-ProteinID:
XP_050966755
LinkDB
All DBs
Position
5:12044874..12063213
Genome browser
AA seq
1255 aa
AA seq
DB search
MDRGKEFIVMASGMGEQAHGSVAYSNESDTTFDMTTSEKVVELLNQAALISTEEKLIVLK
QVQELIINKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNM
LMKDESVNVVKKAILTLTQLYKVALQWLVRTKSVSDIQEACWDMMTQMKEDVLALLDSDN
DGVRTHAIKFTESLIITLSPRTPDSDTPKKQEGDISLDKIPRDHTYIRYDTLCEEGKSAL
EQLLKFMVHPAISSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSS
VRKNLKLHLVSVLKHPSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVE
GKRIKMEAPLVEDDEDKEEPAPVVTPKPSSSVGTQSAIDLTAEFLLPLLSPDNVANLVLI
SMVYLPEVMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLELCKARDEEVK
EEDGGAGESSSKDPLIIRKLSAVSLGQAISVVGAPAAYKSPVTEDAPQIKKLPEPILPTT
QPKAPGTSGRKKVFKLADVVQPFSEDQIAKLTNMAIRRILQSEKAIAQSGMSHVRVKLLA
RLVTQFEGGKKNDLLHFILEDMRGRSELAFSLLYHEYNEYLSQEPSGSLDSYEHCLFTLL
SGLQEKPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQ
YQYLNVLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLF
GAGEDTEVAAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQP
IRGMGMSSPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRF
LIPVINGLEKNEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALH
NIDSSKCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYP
RLAGFVMNILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPE
MREPLLQHVHSFTPHQQAHIPASIMAVLEANTRKPEPEPQPEPHHPEIIEEREVPVPKHI
SMPAPVSQPEPPAPTPVVFAEPLPQQQQQIPARREEVEEPMEQEETDHAALEITSEAAAQ
QMEVSEEPSQSNSETNSEKTDEPMEESAAMPVDVADQPKDESEDVVQEAEESSVD
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggacagaggtaaagaatttatcgtgatggcgtcaggcatgggagaacaagcacatggc
agcgtggcctacagcaatgagagcgacacaacctttgacatgaccaccagcgagaaggtg
gtggaattgctaaatcaggcagccctcatttctacagaggaaaagcttattgttctcaaa
caggtgcaggagttgattatcaacaaggacccttcattgctcgataattttctggatgaa
atcatcgcatttcagactgataagtcaattgaggtgcgaaagtttgtcatcggattcatt
gaggaggcatgtaaaagagacaatgagcttctgctgaggctgattgcgaacctgaacatg
ctgatgaaagatgagagtgtgaatgtggtgaagaaggccattctgacgctcacacagctt
tacaaagtggctttacagtggctggtgcgcactaagagtgtctcagacatacaggaggca
tgctgggatatgatgacccagatgaaagaggatgttcttgcattattggactcagataac
gatggagttcgcactcacgccatcaaattcacagagtccctcatcatcactctgtcacca
cgaacgcctgactctgacacacccaagaaacaagagggagatatcagtctggacaaaatc
cccagagaccacacatatattcgatatgacaccttatgtgaggagggtaagtcggctctg
gagcagctattaaagttcatggtgcatcctgccatctccagcattaatctcaccactgca
ctgggatcactggccacgctggccagacagcgccccatgttcatgtctgaggtggttcag
gcctatgagacgctacatgctaacctgccccctactttggctaagtctcaagtgagcagc
gtgcgcaagaacctgaagctccacctggtctcggtactgaagcaccccagtagtgtggac
ttccagggccagatttccactctgctgctggacctcggcatgtctcagagcgagatcacc
cgctgcacgccagccaccgtacagccccgtaagagactccaccatgagccttatgttgag
ggcaagaggatcaaaatggaggcccccctagtggaggatgatgaggataaggaggaacca
gctccagtcgtcacgccaaaaccatcctcctccgttggcacccaatcagccatcgatctc
acagctgagttccttttacctctgctgagcccagataatgtggccaacctggttctcatc
agtatggtttacctgcctgaagtgatgccggcctctttccaagccacatacacacctgta
gaatcggccggcactgatgcccagatcaaacatttagccaggctgatggccacacagatg
actgcagctggactgggaccagggctggagctgtgtaaggctcgagatgaagaggtgaag
gaggaagatggcggagcgggtgaatccagctccaaagaccctctcatcatccgcaaactg
tctgcagtgtccctgggtcaagccatctcagtggtaggggcaccagcggcctacaagagc
cctgtcactgaagacgcacctcagatcaagaagcttccagagcctatactgcccactaca
cagcccaaagctcctggcaccagtggcagaaaaaaagtgttcaaattggctgacgtggtg
cagccgttttcagaggatcagattgctaaactcaccaacatggctatcaggcggattctc
caatcagaaaaggccattgcacagagtgggatgtcccacgtccgtgtgaagctgcttgca
cggttggtgacccagtttgagggcgggaagaaaaatgacttgctgcattttattttggag
gatatgcggggcagaagtgagctggccttttctctgctgtaccacgagtacaatgaatac
ctgagtcaggagccctccggctctctggacagttatgagcactgtctgttcacactgttg
tccggcctgcaggagaaacctgagcagagagatgggctttttacaaagcttgtgttggag
gctccggtcattacagattctgcgctggaggtgattcaacgctactgtgaggacgagtca
cgtgtttacctggggatgtccacattaaaggagctcattctcaaacgcccctccagacag
taccagtacctcaatgtccttctcaacctcagctctcatgaaaaagaaaaggtgcggtcc
actgctctcagcttcatcaagcgcatgtatgagaaggaacatttgaaagactgtattgag
aagttcgctctcacctacatgcagtttctggtccatccaaacccaccttctcttctgttt
ggagcaggagaggatacagaggtggcggctccctggacagaggagacggtgcgccagtgc
ctttacctctatctctccctcctgcccctcaaccatcgtctggtgcacgagctggctgct
gtctacaccgaggccatcgccgacatcaaacgcagtgtgctcagggtcatcgaacagcct
ataagaggaatgggaatgagctctcctgacctgctactcttggtggagaactgtcctaaa
ggagcagagacgctggtcactcgctgtttgcacatactcactgataaagtgccaccatct
cctgagctggtggagagggtgagggatctttatcataagcgagtaccagatgttcgtttc
ctcatcccagtcatcaatggcctggagaagaatgaggtgatccaggctctacccaaactc
atcaaactcaatcccatcgtggtgaaggaggtgttcaacagactcctgggcactcaacac
agtgagggcagttcctccatgtctccactcactcctggagagctcctcatcgccctacac
aacattgactcctccaagtgtgacatgaagtcaatcattaaagccactaacctgtgtttt
ggggagaagaatgtgtacacgtctgaggtgctggctgtggtgatgcagcagttgatggag
cagacccctcttcccatattgctgatgcgtacggtcatccagtctctcactatgtatcct
cgccttgctggtttcgtcatgaacatcttagcccggctcattctcaaacaggtgtggaag
tatcctaaagtgtgggagggctttgtaaagtgctgtcagcgcaccaaaccccagtcctac
aatgttctcctccagctgcctccaccacaactggctagtgtgtttgagcgctgcccggag
atgagggagccccttctacagcacgttcactccttcacccctcaccagcaagcccacatt
ccagcatctataatggccgttctggaggccaacaccaggaagccagaaccagaaccacaa
cctgaacctcatcatccagaaataatagaagagagagaggtgccagtaccaaagcatata
tcaatgcctgcaccagtatcgcaaccagaacctccagccccgacacccgtagtgtttgct
gaaccactaccacaacaacaacaacagatcccagccaggagggaagaagtagaagaaccc
atggagcaggaagagacagaccatgctgctctggagatcacgtctgaagctgcagcgcag
cagatggaggtgtccgaggaaccatcacagtccaactcagaaaccaattcagaaaagaca
gacgaacccatggaagagtcagctgcgatgcctgtggatgttgctgaccagcccaaagat
gagtctgaggatgtggttcaggaagcagaagaaagcagtgtggactga
DBGET
integrated database retrieval system
