Labeo rohita (rohu): 127165997
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Entry
127165997 CDS
T09007
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lroh03009
]
127165997 (ddx54)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127165997 (ddx54)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Helicases
127165997 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
127165997
NCBI-ProteinID:
XP_050967002
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All DBs
Position
5:6373600..6392294
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AA seq
852 aa
AA seq
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MAQRKKKLIKRKKSSAQRDHELQSDDEEFEVAAGIKDDHDTPSRRLPRFPASSECVSDVE
LDTRELVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPLILDGKDVVA
MARTGSGKTAAFLVPMFEKLKAPQAQTGARALVLTPTRELALQTMKFTKELGKFTGLKTA
LVLGGDSMYEQFAALHENPDIIIGTPGRLMHVIKEMNLKLRAVEYVVFDEADRLFEMGFA
EQLQEIIRRLPDTRQTLLFSATLPKMIVEFARAGLTEPVLIRLDVDTKLSDQLKLSFFHL
RLDDKPALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLTVEGVECAYIYSALDQTARK
INIGRFVHRKAMVLLVTDVAARGIDIPLLDNVINYNFPSKGKLFLHRVGRVARAGRGGTA
FSLVCPDEVPYLYDLHLFLGRPIQLALPEHTQDADGVFGRVPQSILDDEESQLITAHENS
LDLQNLQRISENAYKQYLKSRPNPSAESIKRAKNTDLSSMAVHPLLGCGLEPMELDRLLM
VDSIKGYKSKSTIFEINSNNKSNASEVMRAKRSRDDRLVDKFSKARAERIVESTALTIIR
TEPQNNEDEQEDDELQTVFSEVVGGKRKNHDNETDRPKSKKNRKSGKDEEFYIPYRPKDF
NSERGLSLGSDGGAFEQQASSAVLDLMGDESNTLNQHKSLMKWDRKRKRFVRDSGKEDKN
KKIKTESGQVVSGNKKKKSFYEDWKKKYKIDDRASDSDGETGGARRFGGRRGRGQGGAQS
RPGQQQSDSRVRSELKNRDQILKQRKRKAKQQFLQSGGMKKLRSKGRQRLQQVMRSGFGR
GSFKKGKMRKKL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaggaagaagaagttgataaagaggaagaagagctcggcgcaaagagatcat
gagctccagtctgacgatgaagagtttgaagtggctgcaggaatcaaagatgatcatgac
acacccagcagaagacttcctcgattcccggcctcgtccgagtgtgtttctgatgtggag
ctcgacaccagagagcttgtccgagcccagaacaagaagaagaagaagtctggaggcttt
cagtccatgggtctcagttatccagtgtataaaggcgtcatgaagaagggctataaagtt
cccacacccatccagaggaagactatccccttaattctggacgggaaggatgtggtggcc
atggcccggacgggcagcgggaaaacagctgccttccttgtcccaatgtttgagaagcta
aaggctccgcaggcgcagacaggtgcccgggctctggtcctcacgcccacccgagagctt
gccctgcaaaccatgaagttcaccaaagagctggggaagttcactggcctgaaaactgca
ctcgttctcggtggagacagcatgtacgaacagtttgctgctcttcacgagaatccagac
atcatcatcggtactcctggccgtctgatgcatgtcatcaaagagatgaacctgaagctg
cgggccgtggagtatgtggtgtttgatgaagctgacaggctgtttgaaatgggttttgca
gagcagctccaggaaatcatcagacgtcttccagatactcggcagactctgctgttctcc
gccacactgcccaaaatgattgtggagtttgccagagctggcctcacagagcctgttctc
attcgtctggatgtggatacaaaactgagtgaccagctgaagctttcatttttccacctg
cggttggatgataaaccagcccttctgttgcatctgctgagaaacgtggtgaagccgcag
gaacagactgtggtgtttgtagccaccaaacatcatgtggagtatctcaaagagctctta
acagtcgagggtgttgagtgcgcctacatctacagtgctctggaccagacggctcgcaaa
atcaacatcggacgctttgtccaccgaaaggccatggtgctgttggtcacagatgtggca
gcccgtggcattgacatcccgcttctggacaacgtcatcaactacaacttcccgtcaaag
ggcaaactcttcctgcacagagtcggtcgtgtggctcgtgccggcagaggaggaactgcc
ttcagtctggtgtgtcccgatgaagtgccttacctctatgaccttcatctgttcttgggt
cgacccattcaactcgcccttcctgaacacacacaagatgctgatggcgtgttcggccgc
gttcctcagagcatcctggatgatgaagagtctcagctgataacagctcatgagaactcg
ctggatctccagaatctccagcgcatctcagagaatgcatacaagcagtacctaaagtct
cggccaaacccctcggcagagtccatcaaacgggcaaagaacactgacctctcttcgatg
gctgttcaccctctgctgggttgtgggctggagccgatggagctggaccggctgctgatg
gtggactccatcaagggctacaagtctaaatctactatttttgaaatcaactccaacaac
aaatcgaacgccagcgaggttatgcgagccaagcgttcacgagacgatcgcttagtcgac
aagttttctaaagcgcgagcggagcggatagtcgagtccacagccctcaccataatcagg
actgaaccgcaaaacaacgaggatgagcaggaggacgacgagcttcagaccgtgttctca
gaggtggtaggagggaaaagaaaaaatcacgataatgaaacagacagaccgaagagcaaa
aagaacagaaaatctggaaaagatgaggagttttacatcccgtacagacccaaagacttc
aactcagagcgcgggctcagtctaggcagtgatggtggcgctttcgagcagcaggcctct
tctgcagttctggacctgatgggagatgagagcaacactttaaaccagcacaagagcctg
atgaaatgggatcgcaagaggaaacgctttgtccgtgactcgggcaaagaggacaaaaac
aagaaaatcaaaacagaaagtggacaggtggtcagcggcaacaagaaaaagaaaagcttt
tatgaagattggaagaagaagtataagatcgatgacagagcatcagactcggatggagaa
actggaggagcgaggagatttggcggtcgtagaggcagaggacaaggaggagctcaatca
cgcccaggccagcagcagagcgactcacgtgtgcgttctgagctgaaaaaccgcgaccag
atcctcaagcagcgcaaacggaaagccaaacagcagtttctgcagagtggtggcatgaag
aaactccgttccaaaggaagacagcggctgcagcaagtgatgagatctggctttggtcgt
ggcagctttaaaaaaggaaagatgaggaagaaactttaa
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