Labeo rohita (rohu): 127166123
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Entry
127166123 CDS
T09007
Symbol
trpv1
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
127166123 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127166123 (trpv1)
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
127166123 (trpv1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ion_trans
Ank_3
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
127166123
NCBI-ProteinID:
XP_050967166
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Position
5:complement(20487740..20498544)
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AA seq
803 aa
AA seq
DB search
MNKSRESSPIFFLETDDLTEEERSKAKQTKKGASKDKRPMDSKCLDETEEPAHTIKFNLH
FDRGIRNVKEEPDQQDREKFTLKRLFDAVSSGDVSKLQGLHEYLRKNMKRLTDSQYKSNG
KTALIXFXKHFXIXRNKSINFFKKQKKKTSAGNFAXXXKEYTEEYLKXFKKQFCQCFRXV
MEDSYYKGQTALHVAIEQRSAKFVEMLVKKGADVHAKACGKFFQPNQKTCFYFGELPLSL
AACTNQPDIVDFLMVNPYQAVDVKKTDSHGNTVLHALVSIADNSPQNTEFVTAMYDHILI
KSDQLHPKIKLEEIENKERLTPLKLAAKTGKVELLKHIVQREFPGCRHLSRKITEWAYGP
VCSSLYDLASLDTYEKNSALEIIVYGSEIPNRLKMLQIEPFNKLIEEKWERFVKRMFLFN
FIVYVIYLFILTAVAYHREAGKVLSNSKGTLKPPYPYGKEKNGYLLLTGHIITITGALYF
FVRGLVDMLRKRPRFKSLIIDGYTDQLFFLQAVLFLACVLLYCFGQDQYLACLVLCLALS
WVNLLYFSRGSKRMGIYSVMIQNMVLGEIRRFLVVYIVFLIGFSAAVVTLLDEKGPXVKG
RSFFVPISEKENCTRPSFKNIYFTTLELFKFTIGMGDLEFTDQYQYKEVFYVLLIVYIVM
TYILMLNMLIALMNQRVEEMSEESTNIWKLQRAITTLDMEWILPHCLKRRLRSGEEKDLG
GEQEPDRRWCFSVEEVNWNQWNRNLGAVTEDPGKCMSIPSLTKHQREPSQRRLLQTFSKR
WTQRPQHRDVQELSPLAEASSSI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatctagagagagcagccccatattcttccttgagacggatgacctgacagaa
gaggaaaggtcaaaggccaaacagacgaagaaaggtgcctcaaaagacaagaggcccatg
gattctaaatgcctggatgagacagaggagcctgcacacacaattaaatttaacctacat
tttgacaggggaatcagaaacgttaaagaggaaccagatcagcaagacagagagaagttt
accctcaagaggctgtttgatgccgtgtccagtggcgatgtgtccaaactgcagggttta
catgagtacctgcgcaaaaacatgaaacggctcaccgactctcaatataagtccaatgga
aagacagccctgatttagttctgaaaacacttttaaatttgaaggaataaaagtattaat
ttctttaagaaacaaaaaaaaaaaacatctgctggaaattttgcatgatagtaaaaagaa
tacacagaagagtacttaaagtaatttaaaaaacaattttgtcaatgcttcagataagta
atggaagacagttactacaaaggtcagactgcactccatgttgcaattgaacagaggagt
gcaaaatttgtagagatgttggttaagaaaggggccgatgtccatgctaaggcctgtgga
aaattctttcagcccaatcaaaaaacatgcttctattttggtgagctgcccttgtcgctg
gccgcttgcactaatcagccagacattgttgacttccttatggtcaacccataccaggca
gtggatgtcaagaagacggactctcatggaaacacggtgcttcacgcactagtatccata
gctgataacagtcctcaaaacacagagttcgtcactgccatgtacgaccacattttaatc
aaatctgaccaacttcaccccaagatcaagctggaggaaatcgaaaataaagaaagactc
accccactcaaactagctgccaaaacaggaaaagtggagctgttgaagcacatcgtgcag
cgggagtttccggggtgccgccacctgtcacggaagatcacggagtgggcctacggtcca
gtgtgctcgtctctgtatgacctcgcctctctcgacacctacgagaagaactctgcgctg
gagataatcgtttacggcagtgagattcctaaccgcctcaagatgctccagattgagcca
tttaacaaactaattgaagagaagtgggagagatttgtgaaacggatgttcttgttcaac
tttattgtttatgttatctaccttttcatcctcactgcagtagcttatcaccgcgaagca
ggaaaggtcttgagcaacagcaaagggacattaaagcctccatatccttatggaaaagag
aaaaatggctacctgcttctgacaggacacataataactatcactggagcactttacttc
tttgttagagggttagtagatatgttaaggaagcgtccaagatttaagtccctgatcata
gatggatacaccgatcagcttttttttctgcaggctgtgctcttcctggcgtgtgttcta
ttgtactgctttggtcaggatcaatatctggcctgtctagttctgtgtcttgccttgagc
tgggtaaatctactctacttctccagggggtccaaacgcatgggaatctacagtgtcatg
atacaaaatatggttcttggagaaattcgtcgattccttgttgtgtacattgtcttcctc
attgggttctctgcagctgtggtaactctccttgatgaaaaaggtcccnntgttaaggga
cgatctttcttcgttcctatttctgaaaaggaaaactgtacgaggccctcattcaagaac
atctacttcactactctggagctgttcaagtttacgattggcatgggagatctggagttc
acagatcagtatcaatataaagaggtcttctatgtgctgctaattgtgtatatagtgatg
acttacattttgatgctgaacatgctgatcgctctgatgaatcagagagtggaggagatg
tccgaagagagcaccaacatctggaaactacagcgtgcaatcaccaccttggacatggag
tggattcttccccactgtctgaagagaaggttgcgctccggggaagagaaagacctaggc
ggggagcaggagcctgatcgacgctggtgcttcagtgtggaggaagtcaactggaaccag
tggaacagaaacctgggtgcagttactgaggaccctgggaaatgcatgtctataccttcc
ctaactaaacatcagagagagccaagccagcgtagactcctgcaaacgttcagtaaacgt
tggacacagagaccacaacacagagatgtacaggagttgagtcctttagctgaggcctct
agctccatctga
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