Labeo rohita (rohu): 127166146
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Entry
127166146 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor TFIIIB component B'' homolog
KO
K15198
transcription factor TFIIIB component B''
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127166146
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
127166146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-bind_7
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
127166146
NCBI-ProteinID:
XP_050967200
LinkDB
All DBs
Position
5:19915511..19939263
Genome browser
AA seq
2545 aa
AA seq
DB search
MRRARISIKPNVRPGGRSVAPAAEDKSSQGSSAVGDTQKTLSPSPQSQLEVKESAVAIGD
GNVPGSPSEKASLKINDGVPSSVSTPATTVLQRRSRFSATPNLARPKVRSAPPSSTGKTV
SLPSEPSKTSPFQAAKSFPQSPIPVAVSRDDSQNSTFSDATTAVNCPPSSPCLPITSGCP
ESPSSTVSQHEPCQTPQKLPNEDFGPQEGATPVARTLSPYVKLSRVDGPGSPLRDKISSD
KQRILRALKLKELMKLERKKEKMEKKSRRSKREHCIEPDHDKMTLADFIYYLPESNPMKS
SLFTEETQTQATPPPTPTVQKNLAEADEEEDDDADEEMLVPKVRVAEDGSLILDEESLTV
RVQRTSDTVVENANPLFERGSTTTYASFRKKTYVKNWSVRETDMFYLAISMVGTDFSMIA
QLLTHRSRAEIKNKFRKEEKTNAWRVDKAFRNKRPYDSEFFSFLLKRVLAKDKQKGKSIK
LVVKPSKAKKGKAGKKVKQLEDKDSINDDEDDDELCSVDSVCFDLEKENEDSSNMNEADV
PSSTSKKRKRTKETKPKKKNKKKKGKCLTEDEDSDLVCVDSDLVEGDSVNADNEDQSCMP
GSKKERKPSKTDDQEREEVKTEEKQKKKKNKKTLKVRNEEPTDGESGAVNEESNDASAVP
TKKRKRSKKCEKEEQEPTKRKQKPKKSKTSQEECAGSELGADGSDISTTAPGTEEDQGEK
LFPDSAVKEEISQSSTKRSKRPNLATRKAKIATIEIEDTVEECREESYNEAENELRIIRL
AEEQLQIQPVVVLERTPPRLKDSHSSSASQDQPQSTQSPQRSPGRQIRAEKVKRNLTASG
DGSEVSTAGPGVKENLGVKLIPESTTKEEISQSSPKRSPGRRTRTERVTNNLAALEGDQI
DQCHTSSDPSPEDMSSTAVLNQVGIQDSKEKEADLRVEEGSNLHNLEFLTPSDVNGQTLL
TRAVVLLSHDEVNQYLRSRKQTTAEESTASESQQDTTSARDLHVGENRDGLEEQGSSTGT
LEENVSQDQEVKETDTASISAQQSTAEKRRWFSKPKPSLSQAAQSIRRPLSVQTTDLDVP
SFKHGSKQLQSPVDVQVKIAPNEEPRDRPEEESTCSISPKENNPQDVKVQDDEAETTVDD
LPSLTSVLSPPRASKTEGQEILPFLERPQDPDTEPTDKDVPERREFERSPSPMSENEDQI
TDKEEQDSEPVESEVTDTMIEEPQAELKIISVSCSADGFSVDTQDNIAPERDSQFAKQTP
NLEETSLVMTNPQQTSEPNEDPAEKPEYLSPVKASNLDHDEENISREDKLLSSEVDLHER
KQDEDLLYPVPLLSSTQTSAPKVLMDGTDERETEPNDPVLSDASSAPFEAHSLVSSFSEH
PNEHASNLCDMDTMQFSESAAEEVQIPGDQDSEKRDGTEEPSEASEECSAPLNETAKSEI
SDSTGVDTGANDNQSEEEPTFILTLYEIPASQLFHEAAFGQQSTPPFELEPAQVQTPSLF
SSTSHSHSFTTEASSASLHMASEETSNPCESSSHKVVDDSLDPLSKNAADDASTQLISSQ
ESSLNSLISPPGMFSYNSATPTDVSKLDEILIESPETKAPTQRRCKIKVKPKLKPCVKVG
PSKNDKFDCSPSQNLPTSQTVIESNQKASAQETAGPEIHSSPEDSERGAHPGPDGVISTT
TVPVSEDVRDESQDKWESPLRTELQMDEESVVDSPVHSTFIKESEGKTEVVSHMVLADAF
VLSSGEMKNVFDKEKESPHDSELQKPEDQSVCLTKSEKALPTVIGQKEKMADISKKSEAC
KEATCVSSPASEEKATPFRRGKLQVKPKIPKITSSKNDFSGQEQSDYGYNDPATTQITSP
APLIKEESIKVEQRSEQEDFSDIPKKELDREPASSSQLPQLTPFSTAKTSAWTELQPVDL
KIEGRHEDASHMVLSDILVPVSTGMEDDHMASGSSVQSSVQMGEESQQAVTAQADQETHS
HEGVSHMLLTDMLIPVSEETEDDLSKERTTTGEGSSHEAEKSQVREEPDTADLSCAVSQS
SNVGPSVSPKRKRPTQGKGKLLVKMTFPKRKTGDSPKSPKSGEQSQTMSTSSLMMASTQC
SAETCAVLLSIGSEDREEATGGVSHTVLSDFLVPVLDETSEGSLHEEASSAVLQDNAVKV
EKSTDIERPTNTETEEMNASQSVSVEWKTPCCRRGTLHPEPKLSKKDDPSETDLRQPSST
QTSLATPQQSLDPQAAEWSLKSNMLPMDSDEMENWCEGVSHMLLSDAFVPVSEETGENSM
DLKVFISSSPHRDEQTALSPSKSEEAPYEISSEVHQLNTTSDMPKTVKSNESLPASQAKK
SPARGTFQMTLRSPERRLKDQPCVLKSTQAALTFSQRTQTTKVKDSVGTPTRQQTGEISS
VCRVQLERLSVEEICSAQSVLQPKHHSTPVTVKTTSRDNEMHKASLALHGSSGLESHADD
EEPPVPSGYSPRVVLHRIPLTATDENTSTPTSSPARTSTTQSQTPADHQFPQNSPPVSGL
DAHKNPDQVSHFLLDDIFTEVVDPD
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atgagaagagcaagaattagtattaaacccaatgtcaggccaggaggtcgaagtgtggcg
cccgcagcagaggacaagagctcccaagggtcctcagctgttggtgacacccagaaaaca
ctgtcaccttctccacagtctcagctggaagtcaaagagtctgctgtggcgataggagat
gggaatgtgccgggatctccatcagagaaagcgtcactcaaaatcaatgatggagtgcca
tctagtgtcagcacacctgcaactacagtacttcagaggaggagcagattctctgccaca
ccaaacctcgccagacccaaagtccgttctgctcctccttcatctactggaaagactgtt
tctcttccatcagagccatccaagacatcccctttccaggcagccaagtcttttcctcag
tcccccatccctgttgctgtcagcagagatgattcacaaaactctacattctccgatgcc
actacagcagtcaactgccctccttcctcaccatgtcttccaatcacatctggctgtcca
gaatctccatcatcaacagtgtctcaacatgagccttgccaaactccccaaaaactccca
aatgaggatttcgggccccaagaaggagccactccagttgcacgcacactctcgccgtat
gtgaaactgtcacgcgttgatggaccaggttctcccctcagggacaaaatttcttcagac
aagcagcgcatcttgagggccctcaaactgaaagaactgatgaagctagagaggaagaaa
gaaaaaatggagaaaaagagcagacgatctaaacgtgagcattgcattgagccagatcat
gacaaaatgaccttagctgacttcatttattacctgccagagtcaaaccctatgaagtcc
tcccttttcacagaggagactcagacacaggccactcctccgccaacccctacagtgcag
aaaaatttggcagaagcagatgaggaggaagatgatgatgctgatgaggaaatgcttgtt
cccaaagtcagggtggcagaagatggctcactgatattagatgaagaaagtttgacagta
cgcgttcagaggacatctgatacagttgtcgaaaatgcaaatccactgtttgagcgaggc
tctactactacatatgcaagtttcaggaaaaaaacctatgtgaaaaattggtctgtcaga
gagactgatatgttctatttggccatcagtatggtgggaacagacttctccatgattgct
cagctgttgactcaccgtagcagagcagaaattaagaataaatttaggaaggaggagaaa
acaaatgcatggcgagtggataaagcattcagaaataagcgaccatatgacagcgagttt
ttcagtttcctgctgaagagggtcttagctaaagacaaacaaaaaggcaaatccataaaa
ctggtcgtaaaacccagtaaagcgaagaaaggcaaagctggtaaaaaagtcaaacagctt
gaggacaaagactccattaatgatgatgaagatgatgatgaattgtgcagtgtggacagt
gtctgttttgatttagaaaaggagaatgaggacagcagtaatatgaatgaagcggatgta
ccgtcaagtacaagcaagaagcgtaaacgcacaaaagaaacgaagccaaagaagaaaaac
aagaagaaaaaaggcaaatgcttaacggaagatgaagatagtgaccttgtgtgtgtggac
agtgacttggtggagggagactctgtaaacgcagacaatgaagatcagtcatgtatgccc
ggatcaaaaaaggagcgcaaaccatcaaaaacagatgaccaggagcgggaagaagtgaaa
acagaagaaaaacagaagaaaaagaagaacaaaaagacacttaaagtacggaatgaagag
cctactgatggagaaagtggtgcagtgaatgaggagagcaatgacgcgtctgctgtccca
actaaaaaacggaaacgctctaaaaaatgtgagaaggaagaacaggaacctacaaaaaga
aaacaaaagcctaaaaagagcaaaacatcacaggaagagtgtgctggatctgagctgggt
gctgatggtagtgacatctcgacaacagcccctggtacagaagaggatcaaggggagaag
ctctttccagacagcgcagttaaggaggagatttcacaaagctccaccaaacgttcaaaa
aggcccaatttggcaacaagaaaagctaaaatagcgacaatagagattgaggatacagta
gaagaatgtcgagaagagagctacaatgaagcagagaatgagttgaggatcatccgtctt
gctgaggaacagctccagattcagccggtagttgttctagagagaactcctccaaggcta
aaagattcacacagctcctctgcaagccaagaccaaccacagtccacccagagcccacag
cgttctcctggaagacagatcagagcggaaaaggtcaagcgcaatctgaccgcttcaggt
gatggtagtgaagtctcaacagcaggccccggtgttaaagagaatctaggggtaaagctc
attccagagagcacaactaaggaggagatttcacaaagctcacccaaacgttcccctggg
cggcggacgagaacggaaagggtcacgaataatctggctgctttagaaggggatcaaata
gaccagtgtcatactagctcagatccatcaccggaggacatgagcagcactgctgtgctg
aatcaagtgggcatccaagactctaaagagaaagaggctgatctacgtgtggaggagggt
tcaaatttacataatttagagtttttgactccatctgatgtaaatggtcagacattactg
acaagagcagttgtgttgttatctcatgatgaagtgaaccagtacctcaggagtcgaaaa
caaaccactgcagaggaatcaacagcatctgagagtcagcaggacacaacatctgccaga
gaccttcatgtaggagagaatagggatggtctcgaggagcaggggtcctctactggtact
ctagaagagaacgtctctcaagatcaagaagtgaaggaaactgacaccgcctccatttct
gcccaacagagcactgcagaaaaaaggaggtggttttccaagcccaaacccagtctgagc
caggcagcacagtctatccgcagacctctgagtgtacagacaacagatcttgatgtccca
tcttttaaacatggctcaaagcagctacagagtcctgtggacgtccaagtgaagatcgcc
ccaaatgaagagcccagggaccgtcctgaggaagaaagcacatgtagtattagtccaaaa
gaaaacaatcctcaggatgttaaggttcaggatgatgaagcagaaaccactgtagatgat
ctaccttccttaacatcagttttaagtcctccaagagcgagtaagacagagggccaggag
atcttacccttccttgagaggcctcaggatcctgacaccgaaccaacagataaagatgtg
cctgaaagaagagaatttgaaaggtctccatctccgatgtctgaaaatgaagatcaaatt
actgataaagaggaacaggattcagagcctgttgagtctgaagtcaccgacaccatgatt
gaggaacctcaggcagagctgaagattatttcagtcagctgttctgctgatggcttctca
gttgatacacaagataatattgccccagagagagacagtcagtttgctaagcaaacaccc
aacctagaagaaacatccctggtcatgaccaaccctcagcagacctcagagcctaatgaa
gatcctgctgaaaagccagaatatctgagtcctgttaaagccagcaatttggatcatgac
gaagagaacatctcaagagaagataagcttctgtcatctgaggtggatttacatgaacgt
aaacaggatgaggatctcctgtacccagtcccattacttagctcaacacaaacttcagcc
ccaaaagttcttatggatggcactgatgaaagagaaacagaaccaaatgacccagttctc
agtgatgcttcatctgcaccatttgaagctcacagtctggtttcatctttttctgaacat
cccaacgaacatgcaagcaacctgtgtgatatggacacgatgcagtttagtgagtctgca
gctgaagaagtccaaataccaggtgaccaagattcagaaaagagagacggcacagaagag
ccatcagaagcttctgaggaatgcagtgcccctcttaatgaaaccgcaaaatctgaaatt
tcagattcaactggagtagatacaggtgcaaacgataaccagtctgaggaggagcccacc
tttattttgactctgtatgagattccagcctctcagctgtttcatgaggctgcctttggg
cagcagagcactcccccttttgaactggagccagcacaagtgcagacaccctcgttgttc
tcaagcacttcacattctcattcgttcacaacagaggcttccagtgcatctctgcatatg
gcgtcagaagagaccagtaatccatgtgaaagtagttctcacaaggtggtggatgactcc
ctggaccccctttcaaagaatgcagcagatgatgccagtacacaattgatatcctcacag
gaaagcagtctgaactctttaattagtccacccgggatgttctcctataattctgccacg
ccaacagatgtgtcaaagttagatgagatcctgatagaatccccagaaactaaagctccc
actcagaggagatgcaagataaaggtcaagccgaaactaaagccttgtgtgaaggttgga
ccttcaaaaaatgacaagtttgactgttcacccagtcagaatctaccaacatctcaaact
gtgattgagtcaaaccagaaagcatctgcacaggaaacagctggtcctgaaatccactca
agccctgaagacagtgaaaggggagcccatcctggacctgacggtgtgatatcaacaacc
actgtgccagtctctgaagatgtgagagatgagagtcaagataagtgggaaagtcctctt
agaacagaactccagatggacgaggagtcggttgttgactctccagtgcacagtacattc
ataaaggagtctgaggggaagactgaagttgtttcacacatggtgttggcagatgccttt
gtactctcatcaggagaaatgaagaatgtttttgataaggaaaaggaaagccctcatgac
agtgagctccagaaacccgaggatcagtctgtatgccttacaaagagtgagaaagccctt
cctacagttattggccaaaaggaaaaaatggcagatatttctaaaaagtctgaagcttgc
aaagaggcaacatgtgtgtcatcacctgcatctgaagagaaggccacaccctttaggaga
ggcaagttgcaagtgaagcctaaaatccccaaaattacttctagtaaaaatgatttctca
ggacaagagcagtctgactacgggtataatgatccagccacaactcaaatcacttcacca
gcacctctgattaaagaagaatccattaaagtggagcagagatctgagcaagaagacttc
tctgatattccaaagaaggagttagacagagagcctgcttcgtcttcacaacttccacag
cttacaccattcagcactgcaaaaacatcagcctggactgaattgcaaccagtggatctg
aaaatagagggtaggcatgaggatgcgtcgcacatggtgttgtcggatatattagtgccg
gtttccactggaatggaagatgatcacatggcgagtggaagttcagtacaaagcagtgtt
cagatgggtgaagagagccagcaggccgtcactgcgcaagcagaccaggaaacacattca
catgagggtgtttcacatatgctgctgactgatatgttgatccctgtctctgaggaaacg
gaggatgatctgagcaaggaaaggacaacaactggagaaggaagctctcatgaggcagaa
aagtctcaggtgagagaggagccagatactgcagacctgtcatgtgcagtgtctcaatca
tcaaatgtgggaccatcagtatcacccaagaggaaaagacccactcaggggaaaggcaag
ttattggtaaagatgacatttcccaaacgaaagactggagattcccctaagagtcctaag
agtggcgagcaatcacaaaccatgtctacgtcatccttaatgatggcgtcaacacaatgt
agtgctgagacatgtgctgtcttgctgtccattggctcagaggaccgtgaggaggcaact
gggggcgtttctcacacggtgctatctgattttttggtgcctgtattggatgaaacttca
gaaggcagtcttcacgaagaggcctcatcagcagttcttcaagacaatgcagtcaaagtt
gagaagtcaacagatattgagagaccaacaaatactgaaacggaagagatgaatgcaagt
cagtctgtgtcagttgaatggaaaacaccttgctgtaggagaggtacactgcatccagag
cctaaattatcaaaaaaagatgatccttcagaaactgacctccgtcagcccagctctaca
cagacctcgttagctacacctcagcagtccctggaccctcaagcggcagaatggtccctc
aaaagcaatatgctgcccatggactcagatgagatggagaactggtgtgaaggagtttcc
cacatgttgctgtcagatgcattcgtgcctgtttctgaagagactggagaaaacagcatg
gacctaaaagtgttcatctcaagcagtcctcacagggatgagcaaaccgctcttagtccg
tcaaagagtgaagaggcaccttacgaaatatcaagtgaagtacaccagttaaacactact
tctgacatgccaaagactgtgaagtcaaatgagagtctgccagcatcacaagcaaaaaaa
tcaccagcaagaggtacatttcagatgacgctgagatcgcctgaaagacgccttaaagat
caaccttgtgtgctaaagtcaactcaagctgccctgacattttctcagcgaactcagacg
acaaaagtgaaagactccgtgggaactccaacaagacaacaaacaggagagatctcaagt
gtatgccgggtacagctggaaaggttatctgtggaggaaatctgcagtgcccaaagtgtc
ctacaaccaaagcatcacagcacgcctgtcacagtgaaaaccacttctagagataatgag
atgcacaaggcatctctggctttgcatggaagctctggtttagagtcccatgctgatgat
gaggagccacctgtgccatcaggatactcgccaagggttgtccttcatcgtataccatta
acggctactgatgagaacacttccacacctacctcgtccccagccagaacgtcaaccaca
caatcccaaacaccggcagatcatcagtttcctcaaaacagccctcctgtctctggtttg
gatgctcataagaatcctgatcaagtgtcccacttcttactggatgacatcttcactgaa
gtggtggatccggattga
DBGET
integrated database retrieval system
