Labeo rohita (rohu): 127166296
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Entry
127166296 CDS
T09007
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04010
MAPK signaling pathway
lroh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
127166296
04020 Calcium signaling pathway
127166296
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127166296
Ion channels [BR:
lroh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
127166296
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
127166296
NCBI-ProteinID:
XP_050967408
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All DBs
Position
6:570261..624155
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AA seq
2001 aa
AA seq
DB search
MMVILLNCVTLGMYQPCENIDCSSERCQILQAFDAFIYIFFALEMVVKMVALGIFGRRCY
LGDTWNRLDFFIVMAGVVEYSLDLQNINLTAIRTVRVLRPLKAINRVPSMRILVNLLLDT
LPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYPEENFTLSTGVALPAPYYSPDEEDE
KPFICSLPQDNGIMACSDVPARRVAGHQCCLDVDDLLHHQALGLVTEPFLNASPPSPGLC
VNWNRYYTRCHTGHRNPHKGAINFDNIGYAWIVIFQVITLEGWVEIMYYVMDAHSFYNFI
YFILLIIVGSFFMINLCLVVIATQFSETKQREHQLMQEQRAACLSSSTLAEPGDCYEEIF
QLVCHVLRKARRRTAAFFRTLCCKPPEQIHEKTNINGGEKSLQQHDGATPAASAANQQTE
EDAAEETDRCQRAEGVCQRQSRELWMEIRVKLWGIVESKYFNRGIMVAILINTISMGIEH
HEQPEELTNVLEICNIVFTSMFALEMILKLTAFGCFNYLRNPYNIFDGIIVIISVCEIVG
QSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIFIFSILGM
HIFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPLAALY
FVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDDDEGSSSNGSEQHKNSLTFSDPKL
PSLTPNGHLDLAPLAEEKTRPGFSEENHQSRTISLGRRSSSLRHSRSSHYHHWGRPPPQP
SWSRRCSWNSAGRSARGLRAGGVIGGSLRVRSVHSHPAEHESLLPHPPFLSHRHRRALSL
ELPELLQRPPLVRKKSVSAEHQDCNGKGPGPQGPLLGEVYPQLNARKDKNDLEEDNEYSL
CFRIQKMMEVYRPDWCEKREDWSIYLFSPQNKFRLLCQTIIAHKLFDYVVLAFIFLNCIT
VALERPRIHQGSLERVFLTISNYVFTAIFVAEMTVKVVSMGLYLGDRAYLRSSWNVLDGF
LVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLITSLKPIGN
IVLICCAFFIIFGILGVQLFKGKFYYCVGLDVKNITNKSDCLSANYRWVHHKYNFDNLGQ
ALMSLFVLASKDGWVNIMYHGLDAVGIDQQPVVNNNPWMLLYFISFLLIVSFFVLNMFVG
VVVENFHKCRQHQEVEEARRREEKRLKRMEKRRRKAQRLPYYSSYGRVRLMIHSFCTSHY
LDLFITLIICINVITMSLEHYNQPQSLETALKYCNYFFSSTFVVEATLKLIAFGFRRFFK
DRWNQLDLAIVLLSVMGITLEEIEINASLPINPTIIRIMRVLRIARVLKLLKMATGMRAL
LDTVVQALPQVGNLGLLFILLFFIYAALGVELFGELVCNVEYPCEGMSRHATFENFGMAF
LTLFQVSTGDNWNGIMKDTLRECPPGDNYSCNASLQIISPMYFVSFVLTAQFVLINVVVA
VLMKHLDDSNKEAQEDAEMDAEIEMELAQGGLCCLGRLDRLTGADGGEKPAGGCGNKQAA
MAAVHTHNSASQSGFTPRRSTKDTQNPRKLYSPAQENQWLESVSLLMKDSLDGEMQMIDN
LSGSVFHHYCSPPIRRDGRSQSGEIRLAEVEQTSLMSEQLSDKSSSPALPDDISLDEHSD
YQLLDRDCKEEQGSADLSTDEVVCRRFLPPSEVSSPRQDRRDVRRETGLQLWSPAHCGDG
SGGEGQTSSPLFHLPPEFFHPTTAAIPQGSPATAAPQPGSRHTSPASWASLRSPGANTRV
MGSQPSQSNSSLATGSSASSLQTMPEEGVPQPGDLTLPLICRTHAPPPELSQRSRTPQTL
FNLQATRGRQRNRSRYSDCTNPNLVRQDPSDEDTGSGIRAGGAALPAGQVGNPEQLSDNL
SSFSLTSLHPPDSLAPPLAKKCNSTGSLVQGSLAVRNKDGRCLYGFDPWTEATSEETERD
ASPVDAKTCSQTVGSSCRKNR
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgatcctgctgaactgtgtgacgttggggatgtaccagccctgtgagaacatc
gactgctcctccgaacgctgccagatcctgcaggccttcgacgccttcatctacatcttc
tttgcgctggagatggtggtgaagatggtggctctggggatcttcggccggcgctgttat
ctgggagacacatggaacagactggacttcttcatcgtgatggccggggtggtggagtat
tcactagacctccagaacatcaacctgacggccatccggacggtgagagtcctgcggccg
ctcaaagccatcaacagagtccccagcatgaggatcctggtgaatctgctgctggacaca
ctgccgatgttggggaacgtgctgctgctgtgcttcttcgtcttcttcatcttcggcatc
atcggcgtgcagctgtgggcgggacttctgcgcaaccgctgctatccggaggagaacttc
accctctcaacaggtgtggcactccctgctccgtactactcccccgatgaggaggacgag
aagcccttcatctgctctctgccgcaggataacggcatcatggcgtgcagtgacgtgccg
gcgcggcgtgtggcgggacatcaatgctgtctggacgtggatgatctcctgcaccatcag
gcgctgggcctcgtgaccgagcccttcctcaacgccagcccgccgtcccccgggctctgt
gtcaactggaacagatactacacccgctgccacaccggacacagaaacccgcacaaagga
gccatcaactttgacaacatcggatacgcctggatcgtcatatttcaggttattactctg
gagggctgggtggaaatcatgtattacgtcatggatgctcactcattctacaattttatc
tactttattctgttgattatagtcggctcgttcttcatgataaacctgtgtttggtcgtc
atagcgactcagttttcagagaccaaacagcgtgagcatcagctgatgcaggagcagcga
gccgcctgtctgtcctccagcacgctggccgaacctggcgactgctatgaggagatcttc
cagcttgtctgccacgtcctccgcaaggcgcgccgacgcacagctgccttcttcaggacg
ctctgctgcaaaccaccagagcagatacatgagaagacaaacatcaatggaggagaaaag
agcctccaacaacatgatggagccacacctgctgcctcagcagccaatcagcagacagag
gaggatgccgccgaggagacggacaggtgtcagagagcagagggggtctgtcagaggcag
agccgagagctgtggatggagataagggtcaaactgtggggcatcgtggagagcaaatac
ttcaacagaggaatcatggtggccatcctcatcaacaccatcagcatgggcatagagcac
catgagcagccagaggagctcactaatgttctggagatctgtaacatcgtcttcaccagt
atgtttgctctggagatgatcctcaagctcacagcatttggctgctttaattacctgcgc
aatccatacaacatctttgatgggatcatcgtgatcatcagcgtgtgtgagatcgtgggt
cagtctgacggcggtctctcggtgctccgcaccttccgcttgctgcgtgtcctgaagctg
gttcggttcatgccggcgctgcgcagacagctggtggttctgatgaagacgatggacaat
gtggccacattctgcatgctgctgatgcttttcatcttcatcttcagtattttgggaatg
catatatttggctgcaagttcagcctgaagacggacactggagacacggtcccggacagg
aagaactttgactctctgctgtgggcgatcgtcactgtgtttcagatcttgactcaggag
gactggaacgtggtcctgtataacggcatggcctccacgtctcctctcgccgctctgtac
tttgtggctctgatgacgtttgggaactacgtgctgtttaacctgctggtggccattctg
gtggagggatttcaggctgagggtgatgccaatcgctcgtactctgatgatgatgaagga
tcttcctctaatggaagtgagcagcacaaaaactcactcacgttctcagatcccaagctg
ccgtctctcactcctaatggacatctggatctggcgccgctggcggaggagaagaccagg
cccggcttctccgaggaaaaccaccagagcagaaccatcagcctgggcaggagatcctcg
tctctgcgccacagccgcagttcccattaccaccactgggggcgtcctcctcctcagccg
tcttggagccgtcggtgcagctggaacagcgcgggtcgttccgctcgtggcctgagggcc
ggaggcgtcatcgggggcagcttacgggtccgcagcgttcactcgcaccccgccgaacac
gagtctctcctgccccacccgcccttcctgtcacaccgacaccgccgcgctctctcgctc
gagctgcccgagctccttcagcgccccccgctggtcaggaagaagagcgtgtctgccgag
caccaggactgtaatgggaagggtccgggcccccaggggccactgctgggagaggtttat
ccacaactcaacgcacgcaaagacaaaaacgacctggaggaagacaatgaatatagcctg
tgtttccgtatccagaagatgatggaggtttatcgtccagactggtgtgagaagagagag
gactggtccatttacttattctcccctcagaacaagtttcgactgctgtgtcagacgatc
atcgctcataagctctttgactatgtggttctggctttcatcttcctcaactgtatcaca
gtggctctggagagacccagaatccatcagggcagtctggagcgagtctttctcaccatc
tccaactacgttttcactgccatctttgtggccgagatgaccgtcaaggtggtttctatg
ggtctgtatctgggtgatcgtgcttatctgcgcagcagctggaacgttctggatgggttt
ctcgtgtttgtgtctctgattgacatagtggtgtcgatggcgggcggagcgaagatcctg
ggtgtcctgcgggtgctgagactgctgagaacattacgcccgctcagggtgatcagtcga
gctccaggtctgaagctggtggtggagactctgatcacgtcgctgaagcccatcggaaac
atcgtcctcatctgctgtgctttcttcatcatctttggcatcctgggagttcagctcttc
aaagggaagttctattactgtgtgggtttggatgtgaaaaacatcaccaataaatccgac
tgcctctctgccaattaccgctgggttcatcacaagtacaactttgacaacctggggcag
gctctgatgtcactgtttgtgttggcgtctaaagatggatgggtaaatatcatgtaccac
gggctggacgctgtcgggattgaccagcagcccgtcgtcaataacaacccctggatgctg
ctgtacttcatctccttcctgctgatcgtcagtttcttcgtgttgaacatgtttgtgggt
gtggtggtggagaacttccacaagtgccgtcagcaccaggaggtggaggaggcgcggcgg
cgggaggagaagcggctgaagcgcatggagaagaggaggcgcaaggcccagcggctgccg
tattactcctcgtacggtcgcgttcggctcatgatccactcgttctgcaccagtcattat
ctggacctcttcatcaccctcatcatctgcatcaatgtgatcaccatgagcctggagcac
tacaaccaaccacagtcgttggagacggcgctgaaatactgcaactacttcttcagctcc
acatttgtggtggaggccacgctgaagctcatcgcgttcggcttcagacgcttctttaaa
gacagatggaatcagctggatctggccatcgttctgctgtctgtgatgggaatcactctg
gaggagattgaaataaacgcctcacttcccatcaatcccaccatcatccgcatcatgagg
gtcctgcgcatcgcccgcgttctaaagttgctgaagatggccacaggaatgagagcgctg
ctcgataccgtggtgcaggccttaccacaggtggggaatctgggtttgctcttcattctg
ctgttcttcatctacgccgcgctcggagtcgagctgtttggagaactggtgtgtaatgtt
gaatacccgtgtgaaggcatgagtcgtcacgccacttttgaaaacttcggcatggcgttc
ctaactctcttccaggtgtctacgggagataactggaacggcatcatgaaggacacgctg
cgcgagtgtccgccgggtgacaattactcgtgtaacgccagcctgcagatcatctcgccc
atgtacttcgtgagcttcgttctgacggctcagttcgtcctgattaacgtggtggtggcc
gtgctgatgaagcacctggacgactccaataaggaggcgcaggaggatgcagagatggac
gcggagatcgagatggagctggcgcagggcggcctgtgctgtctgggccgtctggaccgt
ctgaccggggccgatgggggcgagaagccggcgggaggctgcggaaacaaacaggcggcg
atggctgcggttcacacgcacaacagcgccagccagagcggattcacaccgcgcagaagc
acaaaggacacgcagaacccgaggaaactctactcacctgcacaggagaaccagtggctg
gagagcgtctctctgctgatgaaggactctctggatggagaaatgcagatgattgataac
ctatcaggatctgtgttccaccattactgctctccaccaatcagacgagacggcaggagc
caatcaggagagatccggctggcagaggtcgagcaaacgtctctgatgtcggagcagctg
tcagataaatcctcttcacccgcgctgcctgatgacatcagcctggacgagcacagcgac
taccagctgctggacagggactgtaaggaggagcagggcagcgctgatctgagcacagac
gaggttgtgtgcagacgctttcttcctccaagtgaggtctccagtcctaggcaagacaga
cgggacgtgcggcgtgagacgggtcttcagctctggtctccagctcactgtggagatggc
agtggaggagaaggccagacgtcttcacctctctttcatctcccgcctgagtttttccac
cccaccaccgctgcgatcccccagggcagccctgccaccgcagcgccccagccgggctcc
aggcacacatctccagcctcatgggcttctctcaggtccccaggggccaacaccagggtc
atgggctctcagccgtcccaaagtaactcctcactggccactggcagttcagcgagcagc
ctgcagaccatgccggaggagggcgtcccccagccaggagatcttacgctacccttgatc
tgccgaactcatgcgccccctccagaactcagccagagatctcgcactccacagactctg
ttcaacctccaggccaccagggggcgccagagaaatcggagcagatacagtgactgcaca
aatcctaacttggtccgacaggacccctccgatgaggacaccggatccgggattagggcg
ggaggagctgcattaccagccggtcaggttggtaatcctgaacagttgtcggataatctg
agtagcttctctttgacatctctgcacccgcctgattcgctggcaccaccgctggccaag
aagtgcaacagcactggaagtttagtacaggggagtctagcggttcggaataaagacggg
aggtgcctttacggatttgatccctggactgaagcaacgagtgaggaaactgagagggat
gcgtcacctgttgacgccaagacgtgcagccagactgtgggttctagctgccgtaagaac
agatga
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