Labeo rohita (rohu): 127166315
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Entry
127166315 CDS
T09007
Symbol
sned1
Name
(RefSeq) LOW QUALITY PROTEIN: sushi, nidogen and EGF-like domain-containing protein 1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127166315 (sned1)
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
127166315 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
NIDO
hEGF
EGF_TEN
fn3
EGF_2
EGF_CA
EGF_3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
127166315
NCBI-ProteinID:
XP_050967432
LinkDB
All DBs
Position
6:17050685..17098219
Genome browser
AA seq
1390 aa
AA seq
DB search
MGWLRRLVLSTCMLVILLHGVEPAVPLEEFYPFGLDEGDSQTIEQDDGGSGLVAISVAFP
FFGERHNGLYVNNNGLVSFLREVSQFTPVAFPIAGDRRVVAPFWADVDNRRAGQVXFRES
KDPAILRRANADINRYFPEFPMFITTWVLIATWHQVTFFGGSSITPVNTFQVVLITDGEL
SFTIFQYHNISWTTGMHATSGGDLAGLGGIAAQAGFNAGDGRRYFNIPGSRTDDIVDVET
TTNVGYPGRWVFRIDDSQVQVGSCNDSASVCANLRPCQNGGRCIDDCITGNPSFTCSCLA
GFTGRRCQIEVDECSSYPCQNGGTCVDKINHFVCLCPVGFIGTTCETDIDECQETPCLNG
AQCIQGVGNFTCVCQAGYTGFLCESDINECASMPCLNGGVCEDLVNNYTCTCTTNFTGSY
CETELVVIQNSSTTDAANQTVPCDGESCEKHQICEYTDSGNYNCTCTPGYYGDDCEEECP
CQNGGVCVDVNGTCECPTGFTGLYCQFEVTQTPCSNNRPCPDGGPCLEYGGTYLCTCQTG
VDFDHKDFYPYVQPRSACDSSPCQNGGYCYERDGGYICECKHGYRGKHCERVRLSICASS
PCRNGGSCKEEADSYRCVCPYRFTGKHCEVGKPDPCASSPCLNGGTCFHYIGKYKCECSP
SFVGRHCEINRGSSPALEGLDCGLPVKVKHAEVQYSSTTPGSMALYACHPGYTPLPRATQ
SICSSQGSWSQPPVCEEINECLSQPCMNGGTCRDRVASYLCECEDGFSGQRCQTDIDECL
SEPCKHGGTCEDQPGSYFCHCQQGYAGQDCEIEQDGCEPNPCLNGGVCRGYRRNHLCVCK
EGYVGDRCQTLENPCVLQPCGNRGVCWSDRRGNYSCACRVGHTGRDCERDLLPPSGLHVL
RVEENEVELRWDQSDATQNLISGFAVAFAPIGRGPRKTDFLEKQHSTYVLQGLNPGQLYN
ISTFSVKRNTNSNDISQPAFALIRTRPRKVEQLEVMNVSSSQVWLRWLVHVGRHAAISQV
RVSLVPADGSGARTAVLNSSVTEYTFSTLLPGQMYTVDVVTQSGLRPEDLPSTSKSSGPL
HFWTRPLPPQNLSLSHITTTSARITWDHHPRSLPDGFVVNITRGLSTRSRYLPDGSLGTY
TLRDLAPGQHYRLALTAVRKTGQDNIQSVPQHLAFTTLPVSKGQSRGDRPKGGPDSQIGQ
TLTQVQDGGTDDHTELLEEPQRYTELIDGRGRITAKFTNLPQKTIRHRTKPEPPVKLEKM
EETTNKISLALEIPEEATKSKSESSQDCRTQPCQNGGTCAQTNESFSCNCAAAFKGRRCE
LYCQRVPHPCTRLYSETKSVPVWEDGVCHYLYKRTYKVQQDVCFREICEPLLPKKVLPKT
PNRRTQKQQQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggggtggctgaggagactggtgctctccacgtgcatgcttgttattttgcttcatggc
gtggagccggctgtacccctggaggagttctacccatttggcctggatgaaggtgactct
cagaccatcgagcaagatgatgggggatcaggactggttgcgatctctgtggctttccct
ttctttggagaacggcacaacggactttatgtcaacaacaatggcctggtgtctttcctg
agggaggtgtcccagttcactccggtggcattccctattgctggagaccgaagggtggtg
gctcctttctgggcagatgtagacaaccgacgagcaggacaagttnnttttagagagagc
aaagatcctgccatcctgagaagagccaatgcagacattaatcgctacttccccgagttc
cctatgttcatcactacatgggtgctgattgctacctggcatcaagtcacattttttggc
ggcagctcaataactccggtcaatacatttcaagtagttcttatcacagatggtgagctc
tccttcaccatcttccagtaccacaatatttcttggacaacagggatgcatgctaccagt
ggtggtgacctagcaggcttggggggcatagctgcacaggcaggttttaatgctggtgat
gggaggcgctatttcaatatcccaggctctcggacagatgatattgttgatgttgaaacc
accacaaatgtgggttatcctggtcgatgggtctttcgcattgatgattctcaggtgcaa
gtgggcagctgcaatgactcagcttcggtctgtgctaacttaaggccctgtcaaaatggt
ggacgttgcattgatgactgcatcactggaaatccgtctttcacttgctcgtgtttggct
ggcttcactggacgcagatgccagatagaggttgatgagtgctcttcatacccctgtcag
aacggaggcacatgtgtggacaagatcaaccactttgtctgtctgtgtccagtgggattc
atagggacaacatgtgagacagacatagacgagtgccaagagaccccatgcctcaatgga
gcacagtgcatacagggtgtcggcaacttcacctgtgtatgccaagcaggttacactggg
ttcctatgtgagtcagatatcaacgaatgtgcatccatgccatgtttgaatggaggtgtt
tgtgaagacctggtgaataactacacctgcacctgtacaacaaacttcactggaagctac
tgtgagacagagttagttgtcattcaaaattcctctactactgatgctgcaaatcagaca
gttccctgcgatggcgagagttgtgaaaagcatcaaatctgcgagtatactgactctgga
aactacaactgcacctgcacaccaggctactacggtgacgactgtgaagaggagtgtccc
tgtcagaacggaggggtttgtgttgatgtgaatggtacctgtgaatgtccaacaggcttc
actggactctactgtcagtttgaggtaacacaaacaccctgtagtaacaaccgaccatgt
ccggatggaggtccgtgcttagagtatggcggcacatacctctgcacctgccaaactggt
gttgactttgatcacaaggacttctacccatatgtacagccccgatcggcctgcgattcc
tcaccgtgtcagaatggagggtactgctatgagagagacggaggctatatttgtgagtgt
aagcatggctacagaggcaagcattgcgaaagagtcagattaagtatctgtgcctctagt
ccctgtcgtaatggaggctcttgtaaagaagaagctgacagctaccgatgtgtctgtccc
taccgtttcacagggaaacactgtgaagtgggaaagccagatccgtgtgcttccagtccc
tgtctgaatggcggaacatgtttccactacattggtaaatacaaatgtgagtgctcccca
tccttcgtaggaagacactgcgagatcaacagaggatccagtccggctttggagggtctg
gactgtggcctccctgtgaaagtcaagcatgcagaggtgcagtattcctccactacccca
ggctccatggctctgtatgcatgccacccaggctacactccccttcccagggccacccag
agcatctgtagcagccaggggtcctggagccagcctcccgtctgtgaagagataaatgag
tgtttatctcagccatgtatgaatgggggaacgtgtcgtgatcgggtagcctcctacctg
tgtgaatgtgaagatggttttagcggccagcgctgtcaaacagatattgacgaatgcctt
tccgagccatgtaagcacggaggtacatgtgaggaccagcctggctcttacttctgtcac
tgccagcagggctatgccggacaggactgtgagatagaacaggatggatgtgagccaaat
ccttgcttgaacggaggtgtatgccggggctacaggaggaaccacctgtgtgtgtgtaaa
gagggttatgttggagaccgctgccagacattggagaacccatgcgtactgcagccgtgc
gggaaccgaggcgtctgttggagtgatagaaggggaaactacagctgcgcctgcagggtg
ggccacacagggagagactgtgagagagacctgttgcctccatctggcctacatgtgttg
cgggtagaagaaaatgaagtcgagttgcgctgggatcagtcagatgccactcagaattta
attagcggctttgctgtcgcctttgctcctattggtcgtggaccgaggaagacagacttc
ctagagaagcagcattctacctatgtactgcagggcctgaaccccggacagctttacaac
atctccaccttctccgtcaaacgcaacaccaacagcaatgacataagccagccggctttt
gctctcatccgcactaggccacgtaaggtggaacagctggaggtcatgaatgtgtcatcc
tcgcaagtatggctgcggtggctggtgcatgttggccgccatgctgcgatcagtcaggtt
cgggtgtccctggtgcctgcagatggtagcggagctcgcacagccgtgctcaatagcagc
gtcacagagtacaccttcagcacattgctcccaggtcagatgtacacagtagacgtagtc
acacagagtggtttgcgccctgaagacctgccatcgactagcaaatcttctgggccacta
cacttttggaccaggccgcttccacctcagaacctttcactctcccacatcaccaccacc
tctgctcgaatcacatgggaccatcatcctcgaagccttccagatggttttgtggtcaat
attactcgaggcctgagcactcgtagccgctatctacctgatggtagtttagggacatat
acactacgagacctcgctccaggacaacattaccgacttgccctcactgctgtgcgcaaa
acgggccaggacaacattcagagcgtccctcaacacctagccttcaccacactaccagtt
tcaaaaggccaaagccgaggtgacagacctaagggaggaccggacagccagataggacag
accttgacacaagttcaagatggaggcacagatgaccacacagaactccttgaagagcca
caaagatatacagagcttattgacggaagagggagaattacagctaaatttaccaacctt
ccacagaaaaccatcagacaccgcacaaagcctgaacctccagtcaaattagaaaagatg
gaagaaaccaccaataagataagtctagctctggaaattcctgaagaagcgacgaagagt
aaatccgagtcatcccaagactgcagaactcagccctgccagaatggtggaacatgtgcg
cagaccaacgagtcgttcagctgcaactgtgccgctgctttcaagggcagacggtgtgag
ctatattgtcagcgagtacctcacccatgtactcgcctttactccgaaacaaagagtgtc
cctgtgtgggaggatggtgtctgccattatttgtacaaaaggacatataaagttcagcag
gatgtttgttttagagagatctgtgagcctttgctgcctaagaaagtactgcctaagact
ccaaacagaagaactcaaaaacaacaacagtag
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