Labeo rohita (rohu): 127166345
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Entry
127166345 CDS
T09007
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127166345 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127166345 (prpf38a)
Spliceosome [BR:
lroh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127166345 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
127166345 (prpf38a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
127166345
NCBI-ProteinID:
XP_050967493
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All DBs
Position
6:complement(21487178..21491347)
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AA seq
313 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERVCDVILPRLQKRQVLEEAELLDAR
ISALEEDLDEVETSEEEDEEEEKPERVQTPEPHRRSYRDMDRPRRSPSPRYRRSRSPRRR
SRSPKRRSPSPRRDRDRDRHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKSPESR
SKKSHKRSRRGNE
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggctaatagaacggtaaaagatgccaatagtatacatggaacaaaccctcagtatctt
gtcgagaagattatacggacacgtatttatgagtccaagtactggaaagaggaatgtttt
ggacttacagctgaacttgtcgtggacaaagcaatggagctgaagtttgttggtggggta
tatggaggaaacatcaagccaacgccattcttatgtctgaccctaaagatgcttcagatc
cagcctgaaaaggacattattgtggaattcatcaagaatgaagacttcaaatatgtccgt
ttgcttggtgcgatgtatatgcgcctgactggaacttctgtggattgctacaagtattta
gaacccttatacaatgattacagaaaaattaaaagccagaatagaaatggagagtttgag
ttgatgcacgttgatgagtttatagatgagctgcttcatgcagagcgagtgtgtgacgtc
atccttcccagacttcagaagagacaggttttggaagaagctgagctgctggatgctcgt
atcagtgctttggaagaagatctggatgaggtggagaccagtgaggaggaggatgaggaa
gaagagaagccagagagagtgcagacaccagagccacacagaagaagttacagagatatg
gaccggccacgcaggtctccttctccacgctacagacgcagccgctcacccagaagacgg
agcagatcacctaaaagacgaagtccatcacccagacgtgatcgagatcgggatcgtcac
cgcagcaaaagcccccgtagacaccgcagcagatccagggatagaaggcatcgctccaaa
tctccaggtcaccacagaagtcaccggcatcgcagtcactccaagtccccagaaagtcgg
tcaaagaagagtcacaagagaagtcgaagaggaaacgagtaa
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