Labeo rohita (rohu): 127166433
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Entry
127166433 CDS
T09007
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127166433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127166433
03036 Chromosome and associated proteins [BR:
lroh03036
]
127166433
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127166433
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
127166433
Chromatin remodeling factors
BAF complex
127166433
PBAF complex
127166433
GBAF(ncBAF) complex
127166433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
127166433
NCBI-ProteinID:
XP_050967647
LinkDB
All DBs
Position
6:75953..92490
Genome browser
AA seq
1658 aa
AA seq
DB search
MSTPEPPLGGTPCPGPSPGPGPSPGAVLGSGLSPGSSHSMMGPSPGPATSTGHSFPQQAS
AGYSQESLHQMHKPVEDNLSEDARFSQMKVVPMRAGHSGMTRPGSPMDQHSQGYPSPLGA
SEHVSSPVSASGPPSGALLSTSGSSSASLEGADGQTLTQQNRPGNQSAASGSGSSASGSS
ATPTPFNQSQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMPQGPSLTSLPPGG
GGGAGFSRGHGMVGPNMPPPGPSGVPAGVQGQNHNGPPKPWPEGPMVNAATPSNAPQKLM
PPQPTGRPSPAPPSVPPAASPVMPPQTQSPGHLAHPSQPTTMVPLHQKQNRITPVQKPCG
LDPVEILQEREYRLEARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETSLDAKAYKRNKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSITAKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKKKRKKKKLENAEGQTGAL
GPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLDTWLEMNPGYEVAPRSDSED
SGSEEDEEEEEEPPQLLPSQTPAEDKKKIPDPDSEDVSEVDARHIIEHAKQDVDDEYGSA
VFARGLQSYYAVAHAVTERVDKQSSLLVNGQLKQYQIKGLEWLVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEYKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPAARR
AFVPQLRSGKFNVLLTTYEYIIKDKHVLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYL
APRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS
EKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLYRASGKF
EVLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTF
NDPASQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL
RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVKSF
IRSRPHLREREYSVRLLFFQNVPISTSTALLIACCFCLRPFLSQEEDEVPDDETVNQMIA
RSEDEFDQFMRMDLDRRREEARNPKRKPRLMEEDELPTWIMKDDAEVERLTCEEEEEKMF
GRGSRQRKEVDYSDSLTEKQWLKAIEDGTLEEIEEEVRHKKTARKRRRDRDPDAIPSTSG
ARGGRERDDDSKRQKKRGRPPSEKLSPNPPSLTKKMKKIVDAVIKYKENNGRQLSEVFIQ
LPSRKELPEYYELIRKPVDFRKIKERIRSHRYRSLNDLERDVMLLCQNAQTFNLEGSLIY
EDSIVLQSVFTSLRQKIEREEESDGEESEEDEEDEGSDSETRSVKVKIKLSRKDRSAERG
RGRRRTARTRAKPVVSDDDTDEEQEEDRSNSASEEEQG
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagagcccccgttaggagggacgccctgtccggggccttcgcccgggccg
ggcccgtctcccggggccgtgctggggtccggattgtcccccggatcctcacacagcatg
atgggccccagtcccggaccggccacttccacaggacactcctttccgcagcaagcgtct
gcgggatacagccaggagagtctgcaccagatgcacaagcctgtggaggacaacctttca
gaagacgctcgcttcagtcagatgaaggtggttccgatgagggccggtcacagcgggatg
acccgtccagggagcccgatggaccagcactcgcaaggatacccgtctccgctgggcgct
tcagagcacgtgtccagtcccgtgtccgccagcgggcctccgtccggtgccctcctgtcc
acctccggctccagttctgcctcgttggagggtgcggacggccaaaccctcacgcagcag
aaccgtccgggaaaccaaagcgccgcctcgggctccggcagcagcgcctcgggctcctcc
gccaccccgacgcccttcaaccagagtcagctgcaccagctgcgggcgcagatcatggcg
tataagatgctggcgcgcgggcagcctctcccggaccacctgcagatggcagtgcagggc
aagcggcccatgccaggcatgccgcaaggaccgtccctgaccagcctgccgcccggcggt
ggagggggcgccggcttcagccgaggacatggaatggtgggacccaacatgcctcctcct
ggaccttctggagtcccggctggtgttcagggccagaaccacaacgggccccctaaaccg
tggcctgaaggtcccatggtcaatgcggcgaccccctcgaacgctcctcagaagctgatg
ccgccgcagcccaccggacgtccctctcccgcgcctccgtccgtgccgccggccgcctct
ccggtcatgccgccgcaaacccaatctccgggacacctggcccacccgtctcagcccacc
accatggtgccgctacaccagaagcagaaccgcatcacgcccgttcagaagccctgtggt
ctagacccggtcgagatactgcaggagagagagtacaggctcgaagctcgtatcgctcac
cgtattcaggagctggagaatcttccagggtctctggctggagatctgcgcaccaaagcc
actattgagctcaaagcgctcaggctgctcaacttccagagacagctgcgtcaggaggtg
gtggtttgcatgagacgtgacacggccttggaaacctcactggacgcaaaggcctacaag
cgcaacaagagacagtcgttacgtgaggctcgaatcacagagaaactggagaaacagcag
aagatcgaacaggaacgcaaacgcaggcagaaacaccaggaatatctcaacagcatccta
caacacgccaaagacttcaaggaataccatcggtccatcacagcaaagatccagaaactg
accaaagccgtggccacgtaccacgccaacacagaacgcgagcagaagaaagagaacgag
cgcatcgagaaggagcgaatgagacgtctgatggctgaggatgaggaggggtaccggaag
ctcatcgaccagaagaaggacaagcgtctggcgtatctgctccagcagaccgacgagtac
gtggccaatctgacggaactcgtccgtgctcataaagctgtgcaggccctgaaggagaag
aagaagaagaagaggaagaagaagaagctggagaacgcggagggccagacgggggctctg
gggcccgatggagagcccctggatgagacgagtcagatgagtgatcttccagtcaaggtg
atccacgtggacagtgggaagattctgaccggagtggacgctcctaaagctggacagctg
gacacgtggctggagatgaaccctggttacgaggtcgccccgcggtcggacagcgaggat
tctgggtccgaggaggacgaggaagaggaagaggaacctcctcagctgctgccttcacaa
actcccgcagaagataagaagaagattcccgacccggacagtgaggacgtgtctgaagtg
gacgcccgtcacattatagagcatgctaaacaggacgtggacgatgagtacggtagcgct
gtgtttgctcgtggattacagtcgtattacgccgtggctcatgcggttactgagcgggtg
gacaagcagtcgtctttgctagtcaacggccaactcaagcaataccagatcaagggtctg
gagtggctggtgtctctctataacaataatctgaacgggatcctggcggatgagatgggt
ttgggcaaaaccatccaaaccatcgcgctcatcacgtacctcatggagtacaagcgtctg
aacggaccctacctcatcatcgtgccgctctcgactctgtctaactgggtctacgagttt
gacaaatgggcgccgtctgtcgtcaaagtctcgtacaagggatctcctgccgctagaaga
gccttcgtcccgcagctgcggagcggaaagttcaacgtgctgctcacgacgtacgagtac
atcatcaaagacaagcacgtgctggccaagattcgctggaagtacatgatcgtggacgaa
ggccatcgcatgaagaaccatcactgtaagctgacgcaggtgctgaacacgcattacctg
gcgccgcggcgcgtgctgctgaccgggacgccgctgcagaacaagctgccggagctctgg
gcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcacgtttgagcagtgg
ttcaacgcgcctttcgccatgaccggagagaaggtggatctgaatgaggaggagaccatc
ctgatcatccgccgcctgcataaggtgctccgccccttcctgttgcgcaggctgaagaag
gaagtggaggcgcagctgcctgagaaggtggaatacgtgataaagtgtgacatgtcagcc
cttcagagggtcctgtaccgacacatgcaggccaaaggagtgctgctgaccgacggatcc
gagaaggacaagaagggtaaaggcggcactaagactctgatgaacaccatcatgcagctg
aggaagatctgtaatcacccctacatgttccagcagatcgaggagtcgttttccgagcat
ctgggtttctcgggcgggatcgttcaggggcctgacttataccgagcctcggggaagttt
gaggtgctggatcgtattttgcccaaattacgggcgaccaatcacaaagtgctgctcttc
tgccaaatgacgtctctgatgaccataatggaggattatttcgcttaccgcaactttaaa
tacctgcgtctggacggaacgactaaagcggaggatcgtgggatgctgctgaagaccttc
aatgatccggcctctcagtacttcatattcctgctgagcaccagggcgggcggcctgggc
ctcaatctacagagcgccgatacggtcatcatattcgacagcgactggaaccctcatcag
gacctccaggcgcaggatcgagctcaccgcatcggacagcagaacgaggtgcgggttctg
cggctctgtaccgtcaacagcgtagaggagaagatcctggcggccgctaaatacaagctg
aacgtggaccagaaggtgatccaggccggcatgttcgaccagaagtcgtcgagtcacgag
cgccgagcgtttctgcaggccattctggagcacgaggagcaggacgaggtcaagagcttc
atccggtctcgaccacatttacgcgaacgagaatattccgtgagattgttgttttttcag
aacgtgccgattagcacgtctacagctcttctgattgcttgctgtttttgtctgcgtccg
tttctgtctcaggaagaagacgaggtgccggacgacgagaccgtcaaccagatgatcgcc
aggagcgaagacgagtttgaccagttcatgcgtatggacttggacagacgccgcgaggaa
gcccgcaatccgaagcgaaagcctcgtctcatggaggaggacgagctgcccacgtggatc
atgaaagacgacgccgaggtggaaagactcacctgtgaggaagaagaggagaagatgttc
ggccgtggctcccgtcagaggaaagaggtggactacagcgactcgctcacagagaaacag
tggctgaaggccatcgaggacgggaccctggaggagatcgaggaggaggtgcgacacaag
aaaacggctcggaagaggaggcgcgatcgggatccggacgccatcccgtccacttcgggc
gctcgtggaggaagagagagagacgacgacagcaaaagacagaaaaaacgaggccgtcca
ccatccgagaagctttcgccgaaccctccgtcgctcaccaagaagatgaagaagattgtg
gacgccgttatcaaatataaggagaataacggccgtcagctgagcgaggtgtttatccag
ctgccgtcacgcaaggaactgcccgaatactacgagctgatccgcaaaccggtggacttc
aggaagatcaaggagcgcattcggagccatcgctaccgcagcctcaacgatctggagcga
gacgtgatgctgctgtgtcagaatgctcaaaccttcaacctggagggatcactgatctac
gaagactctatcgtgctgcagtcggtgttcaccagcctgcgtcagaagatcgagagagag
gaagagagtgatggagaggagagtgaggaagatgaagaggatgaaggctctgattcagaa
actcgatccgtgaaggtgaagatcaaactgagccgtaaggacagaagcgcagagcgcggc
agaggacgcaggagaaccgcgagaacgagagcgaaacctgtcgttagtgatgacgacaca
gacgaggagcaggaggaggatcgatccaacagcgccagtgaggaagagcagggatga
DBGET
integrated database retrieval system
