Labeo rohita (rohu): 127166496
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Entry
127166496 CDS
T09007
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lroh01009
]
127166496 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127166496 (stau1)
Protein phosphatases and associated proteins [BR:
lroh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127166496 (stau1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
127166496 (stau1)
mRNA cycle factors
Stress granule specific factors
127166496 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Staufen_C
dsrm
DND1_DSRM
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
127166496
NCBI-ProteinID:
XP_050967765
LinkDB
All DBs
Position
6:28649048..28662418
Genome browser
AA seq
701 aa
AA seq
DB search
MSQLQFQAPGNPAASAPPLQLAPPQPGFSIPCAAAPLPSESASHPLRNSALPSASATPFC
NPTVSNMANPKEKTPMCLVNELARYNKIQPEYKLLSEQGPAHSKIFSVRLTLGDQHWDAE
GTSIKKAQHSAATCALAQTTLPKPSHRSPRHPGKNLGGIYKGSEYNVTHTVELNALCMKL
GKKPIYKPIDAYQGMRPAFNYNIRTPGPYARSMQHYYYPFPPVGPVLYHMELSIGGQQFH
GKGRTRQAAKHDAAAKAIKYLQKEPIMQQLAEMKEEPVQENLNKSEISQVFEIALKRNMP
VNFEVLKEAGPPHMKSFVVRVTVGEFSGEGEGKSKKIAKKLAAIAVLEELRKLPQLPVTD
KIPLRIKKKSKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYTLVTERGLPRRREF
VMQVSVAGQNAEGMGPSKKVAKRNAAEKMLELLGFKVPQPQPPKPALKTDEKAPAKKPGD
GRKVTFFEPGSVEKAGLVNKEEDFRVPFLSHQQLPAGILPMVPEVAQAVGANQGPHAKDY
GRTAALNPAKATVTAMIANELLYAGTSPTAEGILKTNNSLAHRPHGPLTRPSEQLSYLAT
VQGLQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQ
QSNERTANGPMTGCNKQDLEGDVLLKPANSSTIGKTLDGTV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcttcagttccaggcacctggcaaccctgcagccagtgccccccctttacag
ctggccccgccccagcccgggttcagcattccctgtgccgctgctcccttaccctcagag
agtgccagtcacccgctccgaaactccgccctgccttccgcctccgccacgcccttctgc
aaccccacagtatctaacatggcaaaccctaaagagaagacccctatgtgtctggtaaat
gagttagcccgttacaataagatccaacctgaatacaagctgctcagtgaacaaggacca
gcccactccaagattttctcagtgcggttaactttgggggatcagcactgggatgcagag
gggaccagtatcaaaaaagcccagcactcagcagcaacatgtgctctcgcccaaaccact
ctccccaaacccagtcacagaagcccccgccacccaggcaagaacctaggtgggatctac
aagggctcagagtataatgtaacccacactgtggagcttaatgcactttgtatgaagttg
ggcaagaagcccatctacaaacctatagatgcctaccaggggatgagaccagcattcaac
tacaacatcagaacaccaggcccttacgcacgctccatgcagcattattactacccattt
cctcctgtggggccagtactgtatcatatggagctgtctatcggtggacaacaattccac
ggcaagggccgcacgcgtcaagcagccaaacatgacgctgcggctaaagctatcaaatat
ctgcagaaagagccaataatgcagcagctagctgagatgaaagaagagccagtacaagaa
aaccttaacaaatcagagatcagccaagtgtttgagattgcactgaagcgcaacatgcct
gtgaattttgaggtgctaaaagaggctgggcctccccacatgaagagttttgtggtgagg
gtaactgtgggcgagttttcaggggagggtgagggcaaaagtaagaagatcgccaagaaa
ctagctgccattgctgtcttggaggagctccgcaaactgcctcaactacctgtcactgac
aaaataccactacgtattaaaaagaaaagcaaatccattattaagctgcagaccagtcct
gagtacggtcagggtatgaaccccatcagcagactggctcagatccagcaggctaagaaa
gaaaaagaacctgagtacactttagtgacagagagaggactgcctcgacgcagggagttt
gtcatgcaggtgtcagttgcaggtcagaatgcagagggaatgggacctagtaaaaaagtg
gccaagcgaaatgcagccgagaagatgctggagcttctgggcttcaaagtgcctcagcca
caaccacccaaaccggcactgaaaacggacgagaaggcacctgctaagaagcctggagat
ggacgtaaagtgaccttctttgagccgggctctgtggagaaagctggtcttgtcaacaag
gaggaagatttccgagttcccttcctcagccatcagcagcttcctgctggcattttaccc
atggtgcctgaggtggcacaggcggtgggtgccaaccagggaccccatgccaaagactac
ggtcgcacagctgccctgaacccagccaaggccacagtaacggccatgattgccaatgaa
ctgctgtacgctgggacatccccaaccgcagagggtattctgaagaccaacaacagcttg
gcacacagaccccacggaccccttaccagaccgtccgaacagctcagctacctggccact
gtacagggcttacaggttgaatacaaagactttcccaaaaataacaagaatgagtttgtg
tctctgatcaactgctcctctcagccccctctcatcagccacggcatcggcaaggacgtg
gagtcttgccatgacatggctgctctgaacatcctgaagctcctgtcagaacttgaccag
cagtccaatgagcgcacagctaatggaccaatgacagggtgcaacaaacaagacctagag
ggcgatgtgttactaaaaccggctaactcaagcaccatcggaaagactctggacggcaca
gtgtag
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