Labeo rohita (rohu): 127166613
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Entry
127166613 CDS
T09007
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127166613 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127166613 (smarcc2)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127166613 (smarcc2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127166613 (smarcc2)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127166613 (smarcc2)
PBAF complex
127166613 (smarcc2)
GBAF(ncBAF) complex
127166613 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
PaaA2
Motif
Other DBs
NCBI-GeneID:
127166613
NCBI-ProteinID:
XP_050967986
LinkDB
All DBs
Position
6:24927815..24945840
Genome browser
AA seq
1013 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGSLCNILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPTAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPRRKRISAKTLTDEVSAPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDLDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKASQTSSSQQLLSFPEKVKDKPADLQNFGLRTDVYSKKSGPAKTKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSSLGPLAYQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RASGRPDPLYGLEGSGIAGTGLEDSDKPSEDGSEENKSTDGQSSQDKRENKESKDGASEE
EEKQGENGKKEEERVREGETERETEKTDSEMADGEKEKERKEGSEEGQRDGESEGEKKAK
VERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQSG
STPSVPHQPVTNASAPPPTQSPASVSTSNAHTEAPPPVSHSSPPHQRTDWNSA
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtctcgcagttcgacaatgtccgggtttggctgggcaagaattataaaaagtatattcaa
gcagagccccccaccaataaatctttgtcgagtctggtggttcagctgcttcagtttcaa
gaggaggtgtttggccggcacgtcagcaaccctccactcactaaactaccgatgaagtgt
tttttggatttcaaatctggaggatctctttgtaatattctggctgctgcctacaagttc
aagagtgatcaaggatggaggagatttgacttccagaatccttcaagaatggaccgcaat
gttgaaatgttcatgactatagaaaagtctttggtacagaataactgtttgtcccgacct
gtgatttacctgagttcagaaatagagcccaagctactaggaaaactgaaggacatcatt
aaacgacaccaggggtctgtgactgaagataagctgtccagctctcatgtagtggtgcct
attcctgctagtctggaggacgaagagtgggttcgtcctgtaatgaagagagacaaacag
atgctgctacactggggctactggcctgatagttatgacacatggatctcagccagtgag
gtggaggctgctgtggaggatccgcccactgctgagaaacccaggaaggtccatgccaaa
tggattctggacctggatcagtttaatgagtggatgaatgaggaagactatgaggtggga
gaaggtggaccgagaaggaagagaatttcagcaaagactcttacagatgaagtaagcgct
ccagatgaaaggcgggataaaaaacccagcagtgccaaaaaaaggaagcgttccccgtct
ccatctcctacccctccaccacaggagagcaagaagaaaaacaccaagaaagggcccacg
actccctacactaagtctaaacgaggacagagagaggaagaacaggaagatctgactaaa
gatttagatgaaccctcacctgtgcctgcagtggaggaagcaacactacctaaaacagtg
actaagaaggactcagattctactccagtgaaaggaggcactatgactgacctggatgag
caagaggatgaatcaatggagactgtggggaaggaggaagaagaaggttctccaagtgta
aaaggggaaccggtgaagggttcagaccttcatgaggataatgtcactgaacagacccat
catattattatccctagctatgctgcttggtttgactataacagtgtccatgctatagag
cgcagagcattgcctgagtttttcaatgggaagaacaagtcaaagactcctgaaatttat
ctggcataccgtaacttcatgattgacacgtacagactgaacccacaggagtatttaacc
tctacagcatgccgtagaaacctggctggagatgtttgtgccatcatgagggtccatgca
tttctggagcagtggggcttgattaactatcaggtggattcagagagtcggcccaccccc
atggggcctccacccacctcacactttcatgtgctggcagatactccatcaagtctggta
ccactacagccgaaagcatcccagacttcatcctctcagcagttgctctcattccctgaa
aaagtaaaggacaaaccagctgacttgcagaactttgggttgaggacagatgtgtacagt
aaaaagagcggcccagctaaaactaaaaatgctgccagtgccactcgggaatggacagac
caggagacgctgctactgctggagggtctagaaatgtataaagatgactggaataaagta
tcggagcacgtgggcagccgcacacaggatgagtgcatcctccacttcctgcgtctaccg
atcgaagacccctacctggaggacagctcctcctccctgggcccgctggcctaccagcca
gttcccttcagtcaggcagggaaccctgtcatgagtactgtagcgttcctggcctctgtg
gtcgaccctcgcgtggcttccgctgcagctaaatcagcacttgaggagttctctcgaatg
aaggaggaggtaccagctgcgttggtggaggctcatgtgcgtcgagtggaggaggcggcc
agagcaagcgggaggccagaccctctctacggcctggagggcagcggcatcgcaggaacc
ggccttgaagattctgacaaaccctctgaggatggaagtgaggagaacaagagcactgat
ggtcaatctagccaagataaaagagaaaataaggagagtaaagatggagccagtgaggag
gaagaaaaacaaggagaaaacggcaagaaagaggaagagagagtgagagaaggagagaca
gaaagagagacggagaaaacggactcagaaatggctgatggcgagaaggagaaagaacgc
aaggagggatcagaagagggtcagagggatggagagagtgaaggagagaagaaagcaaag
gtggagagagatgtaggagagggaaacctggccaccgctgctgcttctgcactcgctgct
gctgctgtgaaagctaagcacttggcagcagtagaggaaaggaagatcaagtcactggtg
gctctgcttgtagagacccagatgaagaaactggagatcaaactcagacactttgaagag
ctggaaactatcatggacagagagagagaggcgctggagtatcagaggcagcagcttctt
gccgatcgtcagtcgtttcatatggaacagttgaagtatgcagagatgagagcccgacag
caacacttccagcagatccaacaccagcaccatagcaaccagcctggcaatcagtctggc
agtactccatctgtaccccaccagcctgtcactaacgcctctgccccgcccccaacacaa
agccccgcctctgtgagcacctccaatgcccacactgaagctcctccacctgtatctcac
agttctcccccccaccaacgcacagactggaacagcgcatga
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