Labeo rohita (rohu): 127166870
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Entry
127166870 CDS
T09007
Name
(RefSeq) immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X1
Organism
lroh
Labeo rohita (rohu)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
ig
Ig_DSCAM-DSCAML_C
Ig_2
THB
C2-set_2
Pur_ac_phosph_N
DUF7652
Motif
Other DBs
NCBI-GeneID:
127166870
NCBI-ProteinID:
XP_050968452
LinkDB
All DBs
Position
6:complement(28868539..28900770)
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AA seq
1768 aa
AA seq
DB search
MMKKAKVLDPTAAGQGGLEILPLRRKGIKRRSKVPGVMITQYIEELPEGMTTPDFTRKPI
ALTIQEGKLAVFKAKVSGNPAPTVSWRRAKGEMNDPQKFQNKYDPTTNEHTLEIPKVSGA
EADTYKCYASNEYGKAVCPVVLNVIEVGFKKEKELQKTEPAGDPTEFRKMLRRGAGKKEE
KKEGDIDDSVWELLLSADKKDYERICIEYGITDFRGMLKKLVEMKREREEEQAQFIQHLS
NLKPIELKSEEAATFELEMELKDPNSRIFLYKDGVMIPFSKETEGEMKHCLKQVGKKYIF
TVTSLNPEDAGIYQVDVEGVNIFSTDFKIPPVDFALKIKEVTAQEREDAMFECVLSQPVS
KISWTLKNTPLSNNEKYEITCSEDKLIHRLRIIDCMPLDAGIYTAIAGIKSCSAWLIVEA
DKDPATKGKKKPRKTTQAGGGGDDLLKIAADQAEKNKKEIAEALEAAKKLQAEREAAEAE
AKARAAAEAEAAKAAAQAAAAAAAAAAAKAAQDALAAAKAKGKSEADAKAAAEAAARAAA
LKAKASAEEEARKQAELKALSEGLSAQQAAAAGAAAAAALAAQAAAAAASLGKAGAAGGV
GGGAAAVVGAVWGAGATGAGEAGGAGGASGAGGAGIAGGAGGVGGAGGAGGAGGAGGAGG
VGGVGGVGVAGGAGGAGGAGKAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGADG
AGGAGGAGGAGGADGAGGAGGADGAGGAGGAGGADGAGGAGGEGGAGAAGGAGGADGSGG
SGGEGGDGGDGGDKKRQRAGPLVPETVVGNSNTPSTVPDVIMEHCKQEGEPEGRTRVRQG
PLIPDTVTGGGNPSYKETPAGSRKPAKSGKPSRSSKPSGSGSPSGSGSPSGSENPSGSGS
PSGSGSASGSGGASGGGDPPGPGKPPGPGGPSEGPTEVTEEEKGAEDEKDESAKADKRSG
RKKQDPQVPETVVDPGVHFSAGLEDCKAIVGEAAELVCKLSSADCKGVWSKDGNEITAAT
EGMTISKDGAVHKLKIAKVTEEFAGKYRFEADGRKTECVIAVEDPPRFSDKEIEAFAKPT
VIKHNQRATFKIPFIGREPFKVQWYKDGEELTPDSHCKIEILENESRLLLSKLQRKDTGE
IKVKVKNEFGTAEAISNLVVLDKPTPPLGPLEIIEASANCIEIKWRPPKDNGGCPIKHYI
LERNQIGRNTWKKIGQISSEAHYKDSDVDHGRRYCYRIRAETDEGISELMETEDVQAGTK
AYPGQPSAPKIASAFKDCINLTWTPPTSTGGTNILGYNLEKRKKGSNLWGLVNPPDQPIQ
GKKYAVKDVVEGMEYEFRVSAINISGAGEPSIASEFVFARDPKKPPGKVIDLRVTDSSYT
TLSLSWTKPKEEPRVQDEAKGYFVDVRPAENTEWDRCNTNAIIMTSYTVKGLKSMAMYWV
RVIAVNEGGEGEPRELDNYILAMPPPVRPRFTDSKIKSFMVVRAGNSARFNINFEASPWP
DVIWLKDGVPVSKRVTISNAEGGSQILIPSADRSDTGIYTIIVKNVVGQETFSIEMRVTD
EPKPPGPTELDENVPGTVTVSWEPSPDEKRDDRLHYMVTKRDSSKRTWHTVADRIFNNRF
TACNIMPGREYQFRVYSKNDIGLSDPSETPKWLITRKKEKFTLNLPESKTCNLENPPRFM
VPLKIHTAPQGYECYMSCAVRGNPTPHVTWYRNNVSINTDTNYYITNTCGVCSMLILRVG
AKDMGEYKVIAENSLGRAECTTNLTVRE
NT seq
5307 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaaagccaaggttttagatccaactgctgccgggcaaggcggactggaaatt
ctacctctcagaagaaaaggcatcaaacggagatctaaggttcccggtgttatgattaca
cagtacattgaggaacttcctgaggggatgacaactccagacttcacacgtaaacccatc
gctttaaccattcaagaaggaaaactagctgtttttaaagctaaagtgagtggaaaccca
gcacccactgtgagctggcgtagagcgaaaggagaaatgaatgatccccaaaagtttcag
aacaaatatgaccccacaactaatgaacacactttggagatacctaaagtcagtggtgct
gaagctgacacttacaaatgctatgcctcaaatgaatatgggaaagctgtttgccctgtt
gtcctaaatgtcattgaagtcggattcaaaaaggaaaaagaattgcaaaagactgaacca
gcaggtgacccaacagagtttagaaagatgctcaggagaggtgctggcaaaaaagaggag
aaaaaggaaggtgacattgacgactctgtatgggaactgctgctgagtgctgacaagaaa
gactatgagcgcatttgcatcgagtatggcatcactgatttccgtggcatgctgaagaaa
ctggtcgagatgaagagggaaagagaagaggagcaggcacagttcatccaacatcttagt
aatctcaaacccattgagctgaagtctgaggaagcagccacctttgaactggaaatggag
ctcaaagaccccaacagccgcatttttctgtataaggacggcgtcatgattccattcagc
aaagagactgaaggcgaaatgaagcactgtctaaaacaagttggcaagaagtacatcttc
actgttacaagtctcaatccagaagatgccggaatctatcaagtggatgttgagggtgtc
aatatcttttcaacggatttcaagattccccctgtggactttgccctgaagattaaggag
gtgacggcccaagagagagaagatgccatgtttgagtgtgttttatcacaacccgttagt
aagatttcttggaccctaaaaaacacacctctctccaacaacgagaaatatgagattact
tgttcagaagacaaactgatccaccgcctaagaattattgattgtatgcctttggatgct
ggaatctatactgctatagccggcattaagtcttgcagtgcttggctgattgtagaagct
gacaaagatcctgcaacaaaggggaagaagaaaccccgtaaaaccactcaggcaggtggt
ggtggtgatgacttgctgaagattgctgctgaccaggcagagaagaacaagaaggagata
gcagaagctttggaggctgctaagaaactccaggctgaaagagaggcagcagaagctgaa
gctaaagccagagctgcagctgaagccgaagcagcaaaagcagcagcacaggcggcagcg
gctgctgcggccgcagctgctgctaaggctgcacaggatgctcttgccgcagctaaagcc
aaaggtaaatctgaggctgacgctaaagccgcagcagaagcagctgcacgggctgcagca
ttaaaagccaaagccagtgctgaggaggaagccaggaagcaggctgagctcaaggcctta
agtgaaggtctgagtgctcagcaagctgctgcagcaggggctgccgcagctgctgccttg
gctgcacaggcagctgctgcagcagcaagtcttggaaaggctggagctgcaggtggagtt
ggaggcggtgctgcagcagtggtaggagcagtatggggtgcaggagctacaggtgctgga
gaagctggaggggctggaggagccagtggggctggaggtgctgggatagcaggaggggct
ggaggagttggtggagcaggaggggctggaggagctggaggagctggaggagccggaggg
gttggaggagttggaggagttggagtagccggtggggctggaggagcaggaggagccggt
aaggctggaggagccggaggggccggaggggccggaggagccggaggagccggaggagcc
ggaggggctggaggggctggaggggctggaggagccggaggggctggaggagctgatgga
gccggaggtgccggtggagctggaggagctggtggagctgatggagctggaggtgctggt
ggagctgatggagctggaggagctggtggagccggaggagctgatggagctggaggagct
ggtggggagggaggagctggagctgctggtggggccggaggagctgatggttctggagga
agcggaggagagggaggagatggaggagatggaggagacaagaagcgtcaaagagcagga
cctcttgtaccagagactgtcgtaggaaactcaaacacacccagcacagttccagatgtg
atcatggagcattgtaagcaggaaggggaacccgagggccgtactcgtgtaagacaaggc
ccactgataccagacacagtgactggtggtggtaacccatcatataaagaaacaccagca
gggtctcgcaaaccagcaaagtctggaaaaccatcacgttccagtaaaccatctggttcc
ggtagcccgtcaggttccggaagcccgtcaggatctgaaaacccttcaggttccggaagc
ccgtccgggtcgggtagcgcttcaggttctggtggcgcttcaggtgggggggacccacca
ggccccggaaagccaccaggtcctggagggccatcagagggccccactgaagttacagag
gaagaaaaaggagctgaagatgaaaaggatgagtcagctaaagctgacaagcgttcaggc
cgtaaaaaacaagacccacaggttccagagacagttgttgatcccggtgttcacttttct
gctgggctggaagactgcaaagctattgtgggagaggcagctgaactggtctgcaaactt
agcagtgctgactgtaaaggcgtctggtccaaagatggcaatgagattactgccgccact
gagggtatgactattagtaaagatggagccgttcacaaactgaaaattgccaaagtaact
gaagaatttgctggaaaatatcgatttgaggctgatgggcgtaaaaccgaatgtgtgatt
gctgttgaagatccacccagattcagtgacaaggaaatcgaagcatttgccaaaccgact
gtgatcaaacacaatcaaagagccaccttcaaaattccatttattggccgtgagccattc
aaagtccagtggtacaaagatggtgaagagctcacaccagactctcactgcaagattgag
attttagaaaatgaaagccgtctgcttctctccaaactgcagcgtaaagacaccggggaa
ataaaagtcaaagtcaaaaatgagtttggcacagctgaagctatttctaatctagttgta
cttgataaacccacccccccacttggaccactggagatcattgaagcatctgccaactgc
attgagatcaagtggagaccaccaaaagacaatggtggttgccctattaaacattacata
cttgagcgtaaccaaattggacgcaacacatggaaaaagataggccagatctcaagtgaa
gcccactataaggacagcgatgttgaccatggcaggagatactgttaccgtatcagagcc
gagactgatgagggcatcagtgaactgatggagactgaagatgtgcaggctggcactaaa
gcatatcctggtcagccatctgctcccaaaatagccagtgccttcaaagactgcattaac
ctgacatggactcctccaaccagcactggaggaactaatattttgggctataatttagag
aaacgcaagaagggcagcaacttgtggggcttagtcaatccaccagatcagccaatccaa
ggaaagaaatacgctgtaaaagatgtagttgaaggaatggagtatgagtttcgtgtgtcc
gccatcaacatatctggagctggtgaaccaagcatcgcctcagaatttgtgtttgcaaga
gatcccaaaaaaccccctggtaaagtcattgaccttagagtgactgactctagctacact
accttgtccttgtcttggactaaaccaaaagaagagcctcgtgttcaggatgaggccaag
ggatacttcgttgatgttaggcctgctgagaacacagaatgggatcgatgcaacacaaat
gccatcatcatgacctcctacactgtaaagggattgaaatcaatggccatgtattgggta
agagtgatcgccgtcaatgaaggtggagagggtgagccgcgggagctggacaactacatc
ttggctatgcctcctccagtgagaccgagattcaccgattctaagattaagagcttcatg
gtggtcagagctggaaattctgcacgatttaacatcaactttgaggcttccccatggcct
gatgtcatctggcttaaagatggtgttcctgtgtccaaacgtgtcactattagcaatgct
gagggaggctctcagatcctgatcccatctgcagatcgttccgatacaggaatctatacc
atcatagtcaagaacgttgtgggacaagagacctttagtattgagatgagagttacagat
gagccaaagcccccaggccccacagagttggatgagaacgttccgggcacggtgacagtt
tcctgggaaccatccccagatgagaaacgcgatgatcgcctgcattacatggtgaccaag
agagactccagcaagaggacctggcacactgtagcagaccgtatcttcaacaaccgtttc
acagcctgtaacatcatgccagggagagaataccagttccgtgtgtactccaaaaatgac
attggcctgtctgacccttcagagacaccaaaatggctaatcacacgcaagaaagaaaaa
ttcacacttaacctccctgagtccaagacttgcaacttggagaatccaccaaggttcatg
gtccccttgaaaatccacacagccccacaaggctacgagtgctacatgagctgtgccgtg
aggggcaaccccactccccatgtcacctggtaccgcaacaacgtcagcatcaacactgac
accaactactacatcactaacacctgtggagtgtgctccatgctcattctcagggttgga
gccaaagacatgggcgagtataaagtcatagctgagaactcgctgggaagagcagagtgc
accaccaatctcacagtgagagaataa
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integrated database retrieval system
