Labeo rohita (rohu): 127167065
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Entry
127167065 CDS
T09007
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127167065 (chd1l)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127167065 (chd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
DEAD
ResIII
LIG3_BRCT
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127167065
NCBI-ProteinID:
XP_050968849
LinkDB
All DBs
Position
6:23143444..23161454
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AA seq
982 aa
AA seq
DB search
MKNQQGCILGDEMGLGKTCQTISLLAYARGCLKMNGPFLVLCPLSVLENWRQELERFCPS
LSVICYTGDKERRAELQKEIKNDRHFHVLLTTYEMCLKDARYLRSWKWKILVVDEAHRLK
NQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSLFLPEAVEDFVSAYADV
QTEPVLADELHRVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDA
FRTDHNTKTQLLNILMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASGKLSLLDTMLAYLQ
EWGHRVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKDVFIFLLS
TKAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTVEEIIY
SRAVSKLRLTNTVIEEGRFSLLDQVQSAASGLQLSEILKFGVDKLLASDESSIQDVDLRL
ILGQSRDGQWLTDEENVKLNESDEEEDEDMEGQNHMYYFEGKDYSKDPSAEDEKTFELLL
EKQLAEIEDAGKEGRALRNKAEVSLSGPLIDPGRKKRPLTESELEQRRQKRQEAAAKRAK
LQEERKKQQEELNYKKKMAWWQSCGYKTRCLPRVDSEGEDMEPDEDDDDNVSWNSTDSDH
TAIHYVLGDVTHPQADREDAIIVHCVDDSGHWGRGGLFTALELRSDEPKKQYELAGYMED
LELGNVLLFPIDDKQSRLSGRDYLALIVAQQRDKANNLSGIRLTALDEGLKKIYREAKQK
KASVHLPRIGHSTKGFNWYGTERLIRKHLATKGISTFIYYYKRATSHSSTVSSSTCTATP
STSHSDPAASSPSGSPHSSSPLGNTEDLSKLSKLSTTSHEGQGAPGLADFMRGVHVYFYN
MAATEKKKLGRYLIAYDGDEEDLMSSHVTHIVGEVESPIHKQELQDLLYRYPQALLVKKK
WLESCFASQRKVSVSKYVIRLT
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccaacagggctgcatccttggtgatgagatgggtctgggcaagacctgccag
accatttctttgctggcatatgctcgaggatgccttaagatgaatggaccgttccttgtg
ctttgtcccttatctgttttggagaactggagacaggagttagaacgcttctgtcccagt
ctgtctgtgatctgttacaccggtgataaagaaagaagggcagagctccagaaggaaatt
aagaatgatagacacttccatgttcttctcaccacctatgagatgtgcctcaaggatgcc
cgctacctgagaagttggaaatggaagatcttagttgtcgatgaggctcaccggctgaag
aaccaggaatcactgctgcaccaaaccctcaaagagtttacagtgggttttcgagtgctg
ttgacaggcacccccattcagaataacttgcaagaagtctattccctcctcaccttcatc
cagcccagtctgtttcttcctgaagccgttgaggactttgtcagtgcctacgcagacgta
cagacagaacctgttcttgccgatgagcttcaccgagtgctccagccctttttgttgcgc
agagttaaagcagaggtggctgccgaactgcccaagaagacagaactcgtggtttttcat
ggcctgtctgcccttcagaagagatactataaagccattctgatgagagaccttgatgcc
tttaggactgatcacaacactaaaactcaacttctgaacattttaatgcagctcaggaaa
tgtgtggaccatccatatttgtttgatggtgtggaaccagagccgtttgagatgggggaa
catttagtggaggccagtggaaagctctctctgctggacaccatgctggcatatcttcag
gagtggggccatcgtgttcttctgttttctcaaatgaccaggatgctggatattctgcaa
gattatttggagtacagaggttacagttatgaacgcctggatggttcagtccgtggagaa
gaacgtaacctagctatcaaaaacttcagcaccaaagatgtttttatattcctcctcagc
accaaagctggaggggttggcatgaacctaactgcagcagatactgtgatttttgtggac
agtgatttcaatccacagaatgacctacaagcagcagccagagcccacaggattggccaa
acaaggcctgttaaggtcatccggcttctcggtagagataccgtagaagagatcatctat
tcccgtgctgtgtctaaactacgtctcaccaacacagtgattgaggagggacgtttttct
ctcctggaccaagttcagtctgcagcttctggtcttcagttaagtgagatcctgaagttt
ggtgtggataagctgctggcgtcagacgagagctctattcaagacgtggacctcaggctg
atcctggggcagtctcgagacggccagtggctaacggatgaagagaatgtcaagcttaat
gagagcgatgaagaggaagatgaggacatggagggtcaaaaccacatgtactacttcgag
ggtaaggactactctaaagaccccagcgctgaggatgagaagacttttgaattgttactt
gagaagcagttagctgaaatagaggatgctgggaaggagggccgtgcacttcgtaataaa
gccgaggtgtccctgtctgggcccttgatcgacccagggaggaagaagagacctcttaca
gaatcagagttggaacagagacgtcagaagagacaagaagctgctgcaaagagggcaaag
ctacaggaagaaaggaaaaagcaacaggaagaactaaattacaagaagaagatggcgtgg
tggcaatcttgtggctacaaaacgcggtgcttgccacgagttgacagtgagggtgaggat
atggagcctgatgaagatgatgatgataatgtcagctggaactccactgattcggatcac
acagccattcactatgtgctgggtgatgtaactcaccctcaggctgaccgagaggatgcc
atcattgtgcactgtgttgatgactctggacactggggcagaggaggattgtttaccgca
ctggagctcagatcagacgaaccgaagaagcagtacgagttggctggctacatggaagac
ttagaactggggaatgttctgctttttcctattgatgacaaacagtcaaggctcagtgga
agagactatctggcactgatagttgctcagcagagggataaagccaacaatttgtcaggc
attcggctcactgccttggatgagggcctcaagaagatctacagagaagccaaacaaaag
aaggcaagtgtccatctgcctcggattggtcactccactaaaggcttcaactggtatggt
acagagagactcattcgcaagcacctggccaccaaaggcatctccacgtttatctactat
tataaacgagccacttcacactcatctacagtttcttcctccacatgcacagctactcca
tcaacatcacactcagacccagcagcatcctcgccatctgggtccccacactcctccagt
ccccttggtaacaccgaagacctttcaaagttatcaaaactctctactacatcacacgaa
ggtcagggcgcaccagggttggctgatttcatgagaggtgttcatgtttacttctacaac
atggctgctacagagaagaagaagcttggccgataccttatcgcatatgacggtgatgaa
gaggatctcatgagctcacatgttactcatattgtaggagaggtggaaagtcctatccat
aaacaggaactgcaagatctattgtatcggtaccctcaggctctgcttgtaaagaaaaag
tggctggagtcttgctttgctagccaaaggaaagtcagtgtgtctaaatatgtaattagg
ttaacctga
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