Labeo rohita (rohu): 127167111
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Entry
127167111 CDS
T09007
Symbol
col7a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
127167111 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
Interfer-bind
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
127167111
NCBI-ProteinID:
XP_050968905
LinkDB
All DBs
Position
6:complement(25131897..25198897)
Genome browser
AA seq
2965 aa
AA seq
DB search
MGCLLQWTLLLAVLLCLPSQSTAQGQCYNVVAADIVFLVDGSSSIGRANFMLVKNFMAGI
VKPFARAVGPSGIRFGVVQYSDTARVEFTFTTYLNGTELITAVENINYKGGNTRTGAGLK
YIADNFFSPSSIRDVPKITILITDGKSQDSVQEPAQKLRSLGVKIFAVGIKSADPAELNL
IASPPQNEFTSQIGNFKALISLLPLVSRRVCTTCGGTYSSDEVYSGPSDLQFSGETTNSL
RFRWTSAGGPVSGYVVQYRPLSALGQPITAELRQETIPSNQQSYTARELRSGTDYLITVI
AQYPNSLGESVSGKARTKPLRGVTALRLIQAGFFTLALGWDTPSDQAQGYRITYGPTGQP
AAQLLEQSVGADSTSLTLVGLQSDTEYVINLYPLFPRNSASPATLTARTLRLEGVQQLSV
ETVSSNSVRVRWTGQVGARGYRVVWGPFTGSDVETVELGGDSESHILGNLRPDTEYIVTV
IALYNGEAEGPAATARFQIERSEQQVLRATTTGPTSIRLNWNLIQAARGYRLEWKAGERG
RVQKQEFPQSTTSYELRNLQPNTEYIITLYTLYEGREEATFFSTKSPAEQAVGRVTNLRV
VDTLGNIIRVGWTGVAGATQYNIIILNTESNEEVNRRVPGNQTIFDLQNLKDGVRYAVSV
TALVGSNEGEPATVYIKTEPLQRVTNLRVVGSNSRRIRIAWTGISGATGYRVTWRQSNTA
EQSRVLGGDTTTYTIDGLQPDDTVIVGVAPVINGRTGEVASVSTRTSGSTGIVSGLRVIE
VTSGRIVISWTPVNRATNYKITWRRDGVEDSEIVPADVASYAIERLQEGAAYQILVSALF
NSREGPAATVNARTDQVTVGRVTNLQVVEAQGEFVRVSWVGVQNATSYRILWRRTDGGEE
LSQLVGGNVTSVDLRQLDQGAQYEVKVLALVRNREGPPVSVRVTTGGQTGTRVEGLRVLD
STQGGLRITWRAVRGASSYRIYWRSSQGEPESSRLISGDATSYTLDGLRPGLSYTVRLSA
VVDGQESEATTIRATTDALPPVTGLSVTDSTENSVLLGWSPVTGATGYILRWIDEEDTGT
GQTETLPSSATSYRVIGLRLGRRYRFTVQPTFQNQVGPETSVEERTVCVGGRLDVVFLVP
ASRDRSGLVGPLLSLLASSAGSFTSIGPRDSQMGVVMYSEDPKVRFLLNRHSNSETLLQE
ILATPFNDRPGNNIGQAMTYARQFLLSAPAGRRYDVPGVVVIIADEKSTDDLSQPAAAVR
ADGVTVLAVGIGRADSRELRSAVTDGSTQNLLYAQDANQLYGLHPDLADLLCGLARGTSV
TPGSCTVECPRGAKGEPGQKGERGRDGVDGRKGEPGRDGLPGRDGPRGPEGPPGQPGSGL
GVRGEKGERGFPGLDGSPGVPGRPGAVGLPGIQGLTGVRGDPGEPGILGPQGLKGEKGER
GEPGSADGGGLPGRKGEPGIPGIPGTPGRPGVDGVKGEAGAQGLPGQDGRPGLPGAAGLS
IKGEKGSAGERGPPGVGSGVAAKGDAGEPGSPGSPGPQGPRGVTGQKGAKGEPGESSEGK
PGPQGNTGDPGDRGPRGPPGEIGTKGDRGQTGPPGLDGAKGDRGLPGPAGDKGDKGSGGS
PGPQGLRGLPGSSGLPGEKGAEGEKGQPGSCDCQGSFGKKGDRGERGLPGTDGTKGDKGD
AGQKGERGAPGAGESGQPGPKGDQGDRGLTGLSGKPGVKGSQGDPGERGEAGSPGPQGPI
GPRGKDGLKGDKGEDGIPGESGIPGKPGERGLRGISGQPGQPGPKGDTGDPGEDGRNGTP
GPAGPRGPKGEQGIQGPPGPPGDGTSGEKQLKGDRGEKGEAGDPGEHGAKGQKGEAGASG
PPGPSGPEGPRGQPGARGDLGDRGSPGDKGDRGAAGLDGRPGQDGKPGPPGAPGLRGDPG
KQGDPGRDGLAGLRGPQGPPGPAGPPGDNGTPGKAGEDGKPGLPGKPGEDGVPGEDGRKG
DKGESGPAGRDGRDGLKGDQGIAGPIGPQGPIGPPGVPGNVGPPGQVVYVKGELAAPIPG
PQGPPGAPGIPGVPGTAGQRGERGPPGLKGDVGDPGEDGRPGTPVDVKRALSEFGIEVRE
LKLLADDRSNLVSKLSELTEGKRGEKGDVGPKGPQGADGLRGLPGERGAKGEQGEKGPPG
PQGPPGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEAGRPGDKGEKGEKGDRGLA
GPAGLPGLGGPPGPKGDSASVQSGLPGPRGLPGPQGIRGEVGPVGPPGPTGERGYTGLRG
EKGDKGPSGESGKDGSPGSPGEPGKPGVEGKPGLPGFPGVLGRPGNPGEPGIRGPTGPMG
GNGPPGAPGVKGNQGEPGTGVQGPPGPQGNRGLPGPAGTPGAIGPQGPPGLPGQVGRGGK
PGVPGRDGVPGKDGLPGLPGKQGIVGPSAPPGLKGEQGDSGPPGKSVTGPPGTKGEMGPP
GVTLPGTAGERGLPGLAGPKGDKGPAGIKGERGVVGEPGDPGENGARGPPGLKGVKGEAG
VGNPGPPGQPGPVGLKGDTGLPGPLGPPGQRGLDGTPGLAGQRGEAGQPGPPGPPGDRGL
QGFIGKAGNPGTPGAAGPPGPPGTAGTPGLKGDKGEIGVGVPGLRGERGEPGPRGGEGQA
GADGERGPTGPPGSKGNRGDKGELGPPGIKGEKGDTQLVGGPAGEKGVKGETGERGPKGA
QGEKGAKGQEGPPGEQGLRGEPGERGSTGFQGARGPGGQKGEAGQPGVPGEAGTPGNDGL
PGMRGEKGEVGLVGQRGLKGERGSKGACGSSGPKGDKGDTGANGRPGLPGRKGEQGEVGS
PGVTGSPGKEGLIGAKGDRGFDGVMGPKGTQGEKGERGQPGIPGPPGPRGADGPSGLTGP
QGPAGGKGPEGLQGQKGERGPPGPAMVGPRGIPGIPGERGEQGEIGPDGPKGDRGEPGMT
EDEIRTYVRSEMNLHCACGGKLCLI
NT seq
8898 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtttgctgcaatggactctgctgcttgctgtgttgctgtgtcttccatcgcag
tctacagctcaaggccagtgctataatgttgttgcagcagacattgtgttcctagtagat
ggatcatccagtattggccgggccaactttatgttagtcaagaatttcatggcagggatt
gtcaaaccctttgccagagcggtaggacccagtggcattcgttttggagtcgtacagtac
agcgatactgccagggtggagtttacatttactacatacctgaatggaactgagctcata
actgcagtagagaatatcaactataaaggtggaaacacgcggactggggctggcctcaaa
tacatcgcagacaatttctttagcccttcatctatcagagatgtacccaagatcactatt
ctcatcactgatggtaaatctcaggacagtgtgcaggagcctgctcaaaaattgcgaagc
cttggagtcaaaatatttgcagtgggtataaagagtgcagatccagctgagttgaatctc
attgcctctcctcctcaaaatgaattcacctctcagattgggaatttcaaagctctcatc
tctttgctgcccctagtgtctcgacgtgtgtgtacaacatgtggaggcacttactcaagt
gatgaggtttacagtggtccatcagacttgcagttttcaggtgagaccaccaattcactg
agatttcgatggacatctgcaggagggcctgtaagtggctatgtggttcagtacaggccc
ctgtctgccttgggacagcctatcacagcagagctccgacaggaaacaataccaagcaac
cagcagagctacactgcacgagagctgcgttcgggcacagactacctgatcactgttatt
gctcagtacccaaacagcttgggagaatcagtgtctggaaaggcccgaacaaagcctctc
cggggtgtgactgcactgcgactgatccaggccgggttttttactctggctttgggctgg
gacactccatctgaccaagcacagggttacagaattacctatggacctacaggtcagcct
gctgcacagctgctggaacaatctgtgggggcagactctacctctctgactttggtcggt
cttcagtccgacacagaatacgtgatcaacttgtacccactgtttccccgtaacagcgcc
tcgccagctaccctgactgcccgcacattgcgtttagagggagtgcagcagctctccgtt
gagactgtctcaagcaacagtgttcgagttcgctggactggacaggtgggggccagagga
tacagagttgtttggggccctttcacaggaagtgatgtagagacggtagaattgggaggt
gatagtgaatcccacattctggggaatctgagaccagacaccgagtacattgttacagtc
attgccctgtacaatggagaagctgaaggaccagcagccactgcacgttttcaaatagag
cgctcagagcaacaggtcctgagagccacaactacaggacccaccagcatcagattaaac
tggaacctcatacaggccgccagaggctaccgactggaatggaaagctggagagagaggc
agagttcagaagcaagagttcccacaaagcaccaccagctatgagctcagaaatctgcag
ccgaacacagagtacatcataaccctatacacactctatgagggacgagaggaagctact
ttcttttcaaccaaatcaccagcagaacaggctgttggtcgtgtcacgaacctgagggtg
gtggatacactcggaaacattatacgagtaggatggacaggagtcgctggggcaacgcaa
tacaacatcatcatacttaatacagaatcaaatgaagaggtgaacagaagagttccaggg
aaccagaccatctttgacctacagaacctcaaagacggtgtacgctatgctgtcagtgta
acggcactagttggatctaatgagggggaaccagcaacagtgtacatcaaaacagaaccg
ttacaacgggtgaccaacttgcgggtagttgggagcaacagtcgacgaatcaggattgca
tggactggtatttctggggcgacaggctaccgagttacctggaggcaaagcaacactgca
gagcaatcccgtgtcctgggtggtgataccactacctacactatagatgggctccagcca
gatgatactgttattgtgggtgtcgccccagtgattaatgggcggactggagaagtggcc
tctgtgtctacaagaaccagtggttctactggaatagtctcagggctacgagtcattgaa
gtaacatccggaaggatagtaatatcctggactcctgtgaatagagcaacaaactataaa
atcacttggcggcgtgatggagtggaagactctgagattgtacctgctgatgtggcctcc
tatgccattgagagactacaggaaggcgcagcctaccaaatattagtctcagcccttttt
aactcacgggaaggtcctgctgccactgtgaatgcaaggacagatcaggtcacggtgggt
cgtgtcaccaatttacaggtagtggaggcccaaggagagtttgttcgagtcagctgggtt
ggagttcaaaatgcaacatcatacagaatactctggaggaggactgatggtggagaggag
ctgagtcagctggttggtggtaacgtgacctcagtggatctgaggcagttggatcaaggg
gcacagtatgaagtgaaggttctggctctagtccgaaacagagagggcccacctgtctct
gtcagagtcactacggggggacagacaggcacaagagtcgagggtttgcgtgttttggac
tcaacccagggggggctccgaataacctggagagcagtgagaggagccagctcatatcgc
atctactggaggtcctcacaaggcgagcctgaatcaagtcgtctgattagtggagatgca
acttcgtacaccctcgatggacttcgtcctggtctgagctacactgtaagactgtctgct
gtggtggatggtcaagaaagtgaagctaccaccatcagagcaaccactgatgccctgcca
cctgtgactggtttgagtgtgacagacagtactgagaattcagtccttttaggatggtca
ccagtaacaggagccacaggttatattttacgctggatagatgaagaggacacaggaaca
ggtcagacggaaacgctgcccagttcagccacttcttaccgtgtaataggtctacgcctg
ggccgtcggtaccgtttcactgtgcagcccaccttccaaaaccaggttggacctgagacc
agtgtggaggaacgcacagtgtgtgtgggagggcgtttggatgtcgtcttccttgtccct
gcgtctcgtgatcgctctggcctggtgggacctttgttgtctctgcttgccagttctgct
ggatccttcacctcgattggacccagagactcacagatgggggtggtgatgtacagtgaa
gatccaaaagtgcgcttcctcctcaatcgtcatagcaacagtgagacccttctgcaggaa
attttggccaccccattcaacgacagaccaggaaataatataggccaggcaatgacatac
gcacgtcagtttttgctgagcgctccagcaggtcggaggtatgatgttcccggggtggtt
gtcattatcgctgatgagaagtcaaccgatgatcttagccagcctgctgccgctgttaga
gccgatggtgtgacagtgttggcggtaggaattggacgtgcagactctagagagttgcgt
tcggcagtgacggatggcagcactcagaatctgctctatgctcaagacgcaaatcagctc
tatggtctccaccccgacctggcagacctcctctgtggccttgcacgagggactagtgtc
acgccagggtcttgtactgtagagtgtccaaggggtgctaaaggggaaccgggtcagaag
ggtgagaggggcagagatggagtggatggaagaaaaggcgagcctggacgtgatggttta
cctggtcgtgacgggcctagaggcccagagggaccaccaggtcaaccaggcagcggtttg
ggagtgagaggagagaaaggcgaaagaggtttcccaggattggatggcagcccaggagtt
ccaggtcgtcctggtgcagttggactaccaggcattcagggattaacaggtgttagaggg
gaccctggagaaccaggcattttaggccctcagggattaaagggagaaaaaggtgaaagg
ggggaacctggatctgctgatggaggaggtttgccgggccgtaaaggagagccaggaatc
ccagggatccctggcactcctggtcgtccaggtgtcgatggggtgaagggagaagcaggt
gcacaaggtctgcctggacaggatggtcgccctgggttgccaggtgctgctggactttct
attaagggtgaaaaaggcagcgctggtgagaggggtcctcccggagtgggcagtggggta
gctgctaaaggagatgccggtgaacctggaagccctggatcgcctggtcctcagggccca
cgaggtgtgactggacaaaaaggagccaaaggagaacctggtgagagtagtgagggtaaa
ccaggcccccaaggaaacaccggagaccctggtgatcggggcccccgaggacctcctggt
gaaattggaactaagggtgatcgaggacaaactggaccacctggtttagatggagccaag
ggagacagaggccttccaggtccagcaggagacaagggagataaaggttcaggaggctcc
cctggacctcaaggactgaggggattgccaggaagcagtggccttcctggagagaagggt
gctgagggtgaaaaaggccaaccaggaagctgtgactgtcaaggttcatttgggaagaaa
ggagaccggggtgaaaggggcctcccaggtaccgatggtactaaaggtgataaaggagat
gctggacaaaaaggggaaaggggtgcccctggagcaggagagtctggccaacctggacct
aaaggggatcagggtgatcggggtctcactggattgtctggaaaacctggtgtgaagggc
agtcaaggtgacccaggggagagaggggaggcgggtagtcctggtccgcaagggccaatt
ggccccagagggaaagatggactaaaaggagacaaaggagaggatggcattccaggtgaa
tcagggattccgggtaaaccaggggagagaggtctaagaggaatttcaggtcagccaggt
caacctgggccaaaaggagacacgggcgatccgggagaagatggacgaaatggtacccca
ggtcctgccggaccaagaggaccaaagggagagcagggaatacaaggtccccctgggcca
cctggagatgggacaagtggagagaaacagctgaaaggtgacagaggagaaaagggagag
gctggtgacccaggggagcatggggctaaaggccaaaagggagaagcgggagcttcaggc
ccgccaggaccaagcggtcctgaggggccacgtgggcaaccaggagctagaggtgaccta
ggcgataggggcagtccaggagacaagggagatagaggagcggctggtttggatggacga
cccggtcaggatgggaaacccgggccgcctggagctcctggattacggggtgacccagga
aaacaaggggatcctggaagagatggtttggcgggactaagagggcctcaggggcctcct
ggaccagctgggccccccggagataatggcacacctggtaaagcaggggaggatgggaaa
ccaggactgcctggaaaacctggcgaggatggcgtgccaggagaggatggtcgaaaggga
gataaaggagagtcagggcctgctggaagagatggtcgagatgggttgaaaggtgatcag
ggcattgcaggacctattggccctcaaggtcccatcggaccgcctggagttcctggaaat
gtcggaccaccaggacaggtggtgtatgttaagggggagctagcagcacctattccaggc
ccccagggccctccaggagcccctggaattcctggagttccaggaactgctggacaaaga
ggtgaaagaggtccgccaggcttgaaaggagatgtgggagatccaggagaggatggcaga
ccaggaactccagtggatgtgaagagagctttgtcagaatttggcattgaggtcagagaa
ctgaaactattagctgatgacagaagcaatctagtatcaaagttgagtgaactgacagag
ggaaagaggggagaaaaaggagacgtcggacctaaaggccctcaaggagcagatggatta
cggggtcttccgggtgaacgaggtgcgaaaggagagcagggtgagaaagggcctcctggc
ccacagggtcctccaggcagggcaattggcgaaagaggtccagaaggtccaccaggacag
gcaggtgaacccggaaagccaggaataccaggagtaccaggacgagccggtgaacttgga
gaagctggcagacctggggataagggggaaaaaggggagaaaggtgacagaggtctagct
ggtccagctggattgcctggcctaggggggcctccaggaccaaagggggattctgcctcc
gttcagagtggtttacctggtccaaggggtcttccaggcccccaaggtatcagaggagag
gttggtccagtaggacctcctggacctacaggagagaggggctacacaggtcttcgtgga
gagaaaggagacaaaggacccagtggagaaagtggaaaagatggctccccaggaagtcca
ggagagccaggaaaaccaggggtggaagggaagccgggcttgcctgggttcccaggagtg
ctgggcagaccgggaaatccaggagaaccaggaatacgaggaccaactggaccgatgggc
ggaaatggacccccaggggctcctggtgtgaagggtaaccaaggagaaccaggcactgga
gttcaaggccctcctggacctcagggtaacagagggttacctggacctgcaggcactcca
ggagcaataggaccacaaggacctccagggctgccaggacaagtgggtagggggggcaag
cctggggtcccagggagagacggtgttcctgggaaagatggcctgccggggttacctggg
aaacagggtattgtcggtccatcggcccccccaggacttaaaggagagcaaggagacagc
ggtccaccaggaaagtctgtcaccggaccccctggaacgaagggtgagatgggtcctcct
ggtgtgacattgccaggtaccgctggagaaagaggacttcctggattagcgggtccaaaa
ggagacaaagggccagcggggatcaaaggagaaagaggtgttgtgggtgaacctggagat
cctggtgagaatggagcaagaggaccaccagggctcaaaggagtcaaaggagaggcaggt
gtgggaaatcctggtcctccaggacaacctggacctgtcggcttaaagggtgacactggc
ttaccaggtcctctgggccctcctggacaacgtggattggatggcacgccaggactggca
gggcagagaggagaagcaggtcagccaggaccacctggaccaccaggagacaggggtcta
caaggatttattggcaaagctggaaacccaggaacaccaggagctgctggacccccagga
ccccctggtactgcaggcactccaggacttaaaggcgataagggtgaaattggtgtagga
gtgccaggtttaagaggagagcgaggagagccagggcctcggggaggagaaggtcaggct
ggagcagatggagagagaggcccaactggtcctcctggcagcaaaggaaacagaggagat
aagggtgaacttggtcctccaggaattaaaggagaaaagggagatactcagctggtggga
ggacctgcaggagagaaaggagtgaaaggagaaaccggggagcgaggacctaaaggtgca
cagggtgaaaagggtgcaaagggacaggaaggaccacctggagaacagggcctaagaggg
gagccaggagagagaggttccactggcttccaaggagcccgtggtcctggtggtcagaag
ggagaagcagggcagccaggtgtcccaggagaagctggaacacctggtaacgatggtctg
cctgggatgagaggagagaagggagaggttgggctcgtaggtcagcgaggcctcaaggga
gaacgaggctccaagggagcatgtggatcaagtggaccaaagggagacaagggggatact
ggggctaatggcagaccgggattgccggggaggaaaggagagcagggtgaagtcgggtct
ccaggtgtcacaggaagtccaggaaaggagggactcattggagccaagggtgacagaggc
tttgatggagttatggggccaaagggaacacaaggagaaaaaggtgaacggggccagcct
ggtatccctggcccccctggtccaagaggagcggatggaccatctggcctaacaggccct
caaggaccagctggaggtaaaggtccagagggcctgcaaggccaaaagggagaaagaggt
cctccaggccctgctatggttggcccacgtggcatccctgggatcccaggagaaagagga
gaacagggagagattggccctgatggacctaaaggagacagaggcgaaccaggcatgacg
gaggatgagattcggacttatgttcgaagtgagatgaacctgcattgtgcttgtggaggt
aagttgtgtcttatatag
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