Labeo rohita (rohu): 127167270
Help
Entry
127167270 CDS
T09007
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04137
Mitophagy - animal
lroh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127167270 (zgc:136908)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127167270 (zgc:136908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127167270 (zgc:136908)
03009 Ribosome biogenesis [BR:
lroh03009
]
127167270 (zgc:136908)
04131 Membrane trafficking [BR:
lroh04131
]
127167270 (zgc:136908)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lroh04147
]
127167270 (zgc:136908)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
127167270 (zgc:136908)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
127167270 (zgc:136908)
Membrane trafficking [BR:
lroh04131
]
SNARE
SNARE associated proteins
Others
127167270 (zgc:136908)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127167270 (zgc:136908)
Exosome [BR:
lroh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127167270 (zgc:136908)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_5
AAA_16
AAA_33
AAA_22
AAA_2
TIP49
Vps4_C
AAA_28
RNA_helicase
NPHP3_N
AAA_14
nSTAND3
Mg_chelatase
AAA_17
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
ATPase
DUF815
AAA_7
ABC_tran
AAA_24
ResIII
Sigma54_activat
TsaE
NACHT
Viral_helicase1
NB-ARC
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
127167270
NCBI-ProteinID:
XP_050969157
LinkDB
All DBs
Position
1:10695057..10706514
Genome browser
AA seq
805 aa
AA seq
DB search
MPAAGASDPKSEDLSTAILKQKTRPNRLIVDEANNEDNSIVCLSQVKMEELQLFRGDTVV
LRGRKRRQTVCIVLTDDTCGNERVRMNRVTRNNLRVRLGDVISIHACPDVKYGKRVHVLP
IDDTIEGLTGNLFEVFLKPYFLEAYRPVHKGDIFLVRGGMRAVEFKVVETDPSPHCIVAP
DTIIHCEGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP
AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRVHVVVMAATNRPNSVDPALR
RFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQISTETHGHVGADLAALCSEA
ALQAIRKKMTLIDLEDDSIDADLLNSMAVTMDDFKWALSQSNPSALRETVAEVPQVNWED
IGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARGGGAGDAGGAAD
RVINQILTEMDGMTNKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDMPSRSAILR
ANLRKSPVAKDVDLAYLSRITEGFSGADLTEICQRACKLAIREAIEAEIRAERQRQARKE
AAMDDDYDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPTAPQ
SGGGQGSGQGSGGHFRDDGDDDLYQ
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgctggagcctcagatcctaagtcggaggatctctccactgctattctgaag
cagaagactcgaccaaatagactcattgtggatgaagccaacaatgaggacaacagtatt
gtgtgcttgtcacaggttaaaatggaggaacttcagctgtttcgtggtgacactgtggtt
ttacgcggtcggaagcgaaggcagacggtctgcattgttctcacagacgacacgtgtggc
aacgagcgtgtgcgcatgaacagggtcacccgcaacaacctgcgtgtgcgtctcggtgat
gtcatcagtatccacgcttgtccagatgtgaaatatgggaagcgcgtccatgttctaccc
attgatgacactattgaggggcttacaggcaacctgtttgaggtttttctaaagccgtat
ttcctggaggcctaccgacctgttcataaaggtgatattttcctggttagaggaggcatg
agagcagtggagtttaaagtagtagaaacagaccccagcccacactgcatcgtagcccca
gataccattatccactgtgagggagaaccaatcaaacgagaggatgaggaggagagcctg
aatgacattgggtatgatgacatcgggggttgtcgcaaacagctggctcagattaaagag
atggtagagctgcctctcaggcaccctggcctgttcaaagccattggagtgaagcctccg
agaggaattctactttacggtccacccggcacgggcaagacgttggtggctcgtgctgtt
gctaatgagacaggagctttcttctttctcatcaatggtcctgaaatcatgagtaaactg
gcaggggagtctgagagcaacctgagaaaagcttttgaggaagctgaaaaaaatgcccct
gctatcatcttcatcgatgagctggatgcaatcgctccgaaacgagagaagactcatggt
gaggttgagcggaggatcgtctctcagctgctcaccctgatggacggcctgaaacaacgt
gttcatgttgtagttatggcagccacaaacagacctaacagcgtggatcctgctcttcgg
cgctttggtcgttttgatcgagagattgacattggcatccctgattccaccggcaggctg
gaaattttacaaattcacaccaagaacatgaaactatcggacgatgtggacctggaacag
atctcaactgaaacacacgggcacgtgggagcagatttggctgctctgtgttcagaggca
gcgctgcaggccatccgcaaaaagatgaccttgattgacctggaggatgacagcattgat
gcagacctcctcaactcaatggccgtcaccatggacgacttcaagtgggctctaagtcag
agtaacccatctgctctgagggagacggtggcggaggttccacaggtcaactgggaggac
attggaggacttgatgaagtgaagcgagagttacaagagcttgttcagtatcctgtggag
tatcctgataaatttctgaagtttggaatgactccatctcgaggggttctgttctatggt
cctcctggttgcggcaaaaccctactagccaaagccatcgccaacgagtgccaggccaac
tttgtatctattaaaggcccagagctgctcaccatgtggtttggtgaatcagaggcaaac
gtcagagatgtgtttgataaggcgcgacaggcggccccgtgcattctgttctttgacgag
ctggactctattgctaaagcacgaggtggcggggctggagatgcgggaggtgcggctgac
agggtcatcaaccagatcttgacagaaatggatggaatgaccaataagaagaacgtcttt
atcattggcgccaccaacaggcctgatatcattgatcctgcaatcctgaggcctggacgt
ttggatcaattaatttatatccctctacccgacatgccttcccgcagcgccatcctacgc
gctaacctgcgcaagtcccctgtcgctaaggatgtagacctggcgtatctgtcccggata
acagagggattctcaggagcagacctgactgagatctgtcagagggcctgtaagctcgct
ataagagaagctatagaagcagagatccgtgctgagagacagcgccaagctaggaaagag
gctgctatggatgatgattatgacccggtgcctgagatcaggaaagatcattttgaggaa
gccatgagatttgctcgtcggtctgtcagtgataatgacatacggaagtatgaaatgttt
gctcagactcttcagcaaagccgtggatttgggaacttcaggtttcctacagctcctcag
tcaggtggaggtcaggggtcaggccaaggctctgggggtcatttcagagatgatggagat
gatgatctctatcagtaa
DBGET
integrated database retrieval system
