Labeo rohita (rohu): 127167280
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Entry
127167280 CDS
T09007
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127167280 (pdzrn3b)
Enzymes [BR:
lroh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127167280 (pdzrn3b)
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
127167280 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
zf-RING_6
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
127167280
NCBI-ProteinID:
XP_050969166
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All DBs
Position
6:complement(27449178..27553640)
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AA seq
1052 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLDNHCCLKALKAHNGALQGKVVSLD
KELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSLSPPCKGG
ETKSVTAILHRESGSLGFNIVGGRPCADNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKPTGPSGDAQVVDISTQTDIT
FQHIMALSKLPTSSPPVDVLEQYLLPEGHSPAHEYFDPNDFLEGMQHEIEREELEYEEVD
LYRTNIHDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSHHHEKDSGVGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRRLAYSQDTLGSGDLPFSSESFISADYADADFLGDFPADECERFRELLELKCQMRSGS
GTPEQSLFWPSGGVGAGQGSVGEEGVDKELELLNEELRSIELECLSIVRAHRMQQLREQC
REQSWMLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLELS
PDNSLRRGNENQAEAGASSGTSGAGRILKPLLSPVQEACSPNRGRPTSKESEAGTQPEIR
ERKGGRHAQPQSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAQSQMSLVSMCRDPVASADL
GPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAVSEMKMGRYWSK
EERKQHAVRAKEQRQRREFMKQSRMDCLKEQVSTAEDKKELNIIELSHKKMMKKRNKKIF
DNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgtttcaagggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggatccgctcactaccccgtgcggtcacgtcttctgcgctggc
tgtgtgctgccgtgggtcgtccagcagagcagctgcccggtcaaatgccaaaggatctcc
accaaagagctcaaccacgtcctccctctgaaaaacttgatactgaagttagacattaaa
tgtgacaaccacgcgcggggctgcgagaagatcgtcaaactccagcatctggcggagcac
gcggagatgtgcgattattcccctgccaaatgtaggaataagggctgcaacgaagtgctg
aaccttaaagatatggatgctcacatgcgtgaatcgtgtgattacagagcggtcgggata
tgcgagagtggatgcggattgatgctcactcataaggagcagaagttggacaaccactgc
tgtttgaaagccctcaaggcgcacaacggcgcgctgcaagggaaagttgtcagcttggat
aaggagctcaagaaacaagcgctcaaatctactaaaagagagaaatcacttttggctcaa
ctgtcggcggtccataacgagcttcagatgacagcgctgaagtatcagaagaaattcact
gaatacagcgccaggattgactcgctgtccaagagtctctctccaccgtgtaagggtgga
gagaccaaaagtgtcacggctatactccatcgtgagtctggatctttaggcttcaatatt
gttggaggaaggccatgtgctgataataaagatggcacttcgaatgaaggaatctttgtg
tcgaagattgtggaaaatgggccggcggataaagaagggggtttgcagatccatgacagg
ataatggaggtcaatggaaaggacttgtcaaaggcgacgcacgaccaggcagtggaggcc
ttccgtacggctaaagagcccattatggtccaagtgctacgccgggctcccagacccaaa
cctacaggcccaagtggggatgcgcaagtagtggacatcagcactcagacggacatcacc
ttccagcatatcatggccctcagcaagctgcctacgtcttcaccgcctgtggatgtgctt
gagcagtacctgctgccagagggacactctcctgctcatgaatacttcgaccccaatgat
ttccttgagggcatgcagcatgagatagaaagagaggagctggaatatgaggaagtggat
ttatacagaactaatatccatgataaactggggttaactgtgtgctacagaaccgatgat
gaggatgagactgggatctatgttagtgagattgatccgaacagcattgctgcgaaagac
ggacgaattcgagagggagatcgaatcatccagatcaatggcattgagatccagaatcgt
gaggaagcagtggctcttctaaccagtgaagaacacccaaatgtgtgcctgctcttggct
cgaccagagatacagctggatgagggctggatggatgatgacagaaatgactacctggat
gacctccacatggatatgttagagcaacaacaccatcaggctatgcagttcaccgcgagc
atgctccagcagaagaagcacgaggaggatggaggtacaacagacactgccacactgctc
tcccaccaccatgagaaggacagcggagtgggtcgcacagacgacagcactcgtaacgat
gagagttctgagcaggagaatcttgcagatgaccagaccagcgcatcaaccacgctaggc
agccgccgcaggcttgcctatagtcaggacaccctaggcagcggcgacctccccttcagc
agcgagtccttcatttccgcagactatgcggatgcggatttcttgggtgactttcctgct
gacgaatgcgagcggtttcgagagctcttggagctcaagtgccagatgcggagcggcagc
ggtaccccagagcagagcttgttctggcccagtggcggcgtaggtgccggacagggcagt
gttggcgaggagggcgttgataaagaactggagcttctgaatgaggagctccgcagcatt
gagcttgagtgcctgagcatagtcagagcacaccgcatgcagcagttgcgtgagcagtgc
cgcgaacagtcctggatgctgcacaacagtggcttccgcaactataacacaagtgtggat
gcaagacgccacgagctagcagacatcagtgagctcccagaaaagtccgacaaggacagc
tccagcgcgtacaacacgggagaaagttgccgtagcacgccactcacgttagagctttcg
ccggacaactccttgcggcgtggaaatgaaaatcaggcggaagccggggcaagtagtggc
acctcaggtgctggcagaattcttaaacctctgctgtcacccgtccaagaggcttgcagc
cccaacagaggtcgtccgacctcaaaagagtctgaggctggaacccagcctgaaatccga
gaacgcaaaggtggtcgccatgcccagccccagtcaccctacaaacacgcccacatcccg
gcccacgcccagcactaccagagctacatgcaactaatacagcaaaagtcagtggagtac
gcccaaagccaaatgagccttgtgagcatgtgccgggacccggtcgcttctgccgacttg
ggacccaagatggagtggaaagtgaagatccgcagcgacggtacgcgctacattaccaag
cggcctgtccgggacaagctcctgaaagagcgagccctacggatccgagaggagcgcagc
gggatgactacagacgacgatgccgtcagcgagatgaagatgggacgctactggagcaaa
gaggagcgcaagcaacacgccgtccgtgccaaagagcagcgtcagcgcagggaatttatg
aagcagagccgtatggactgtctgaaggagcaagtgagcaccgctgaagacaagaaggaa
ctcaacatcattgaactaagtcacaaaaagatgatgaagaagcggaacaagaaaatcttt
gacaattggatgactatccaggaactgttgacccacggtacaaagtcccccgatgggaca
cgagtatacaactccctactgtcagtgaccacggtgtag
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integrated database retrieval system
