KEGG   Labeo rohita (rohu): 127167316
Entry
127167316         CDS       T09007                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
lroh  Labeo rohita (rohu)
Pathway
lroh03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    127167316 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lroh03019]
    127167316 (rae1)
   03036 Chromosome and associated proteins [BR:lroh03036]
    127167316 (rae1)
Messenger RNA biogenesis [BR:lroh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     127167316 (rae1)
Chromosome and associated proteins [BR:lroh03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    127167316 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_WDR90_POC16_2nd WD40_RFWD3 PAC11 ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 ASA1 Beta-prop_ACSF4 DSE1_N Beta-prop_SPT8 Beta-prop_Nup120_160 WDR90_beta-prop_4th ExoI_SH3 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 127167316
NCBI-ProteinID: XP_050969235
LinkDB
Position
6:12093704..12103197
AA seq 369 aa
MSLFGTNTAFGSGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQT
IQIAQHEGPIRTIHWIKAPNYSCVMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNSNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttattcgggacgaacacggcctttgggtccgggggaacaggtgtatttggcagc
accaccacagacagtcataatccaatgaaggatgttgaagtaacatcgccacccgatgac
agcataagctgcttggcattcagtcctcctacgatgcctggaaactttctcatcggaggc
tcgtgggccaatgacgtgcggtgctgggaggttcaagataatggtcagactgtccctaaa
gcccagcagatgcacacaggcccagtgctggatgtgtgctggagtgatgatggcagtaaa
gtctttacagcctcctgtgacaaaactgccaagatgtgggatctgaacagcaatcagacc
attcagatcgcacaacatgaaggcccaatcaggacaattcactggattaaagcgccaaac
tacagctgtgttatgactggcagttgggacaaaacactgaagttttgggatacacgttcc
ccaaaccccatgatgtccctgcagatgccagagaggtgttactgtgcagatgtggtatat
cctatggctgttgtagctactgcagaacgtggtcttattgtttaccagttggaaaatcag
ccttcagagtttcgtcgtatagagtcacctctgaagcatcagcaccgctgtgtggctatc
tttaaggacaagcagagtaaacctactggttttgcactgggcagcatcgagggacgggtt
gccattcattacataaacccacctaacccagccaaggacaatttcacctttaagtgccac
aggtcaaacggaaccaatactgccacaccccaagatatttatgctgtgaatgctatctcc
tttcaccctgtccatggcactctggcaacagtaggctctgatgggcgcttcagtttctgg
gataaagatgcccgcactaagctgaagacctctgaacaattagatcagccaataacggct
tgttgcttcaatagcaatgggaacatatttgcctatgcttctagctatgactggtctaag
ggacatgaatattacaatccccagaaaaagaattacatcttcttgaggaatgcggctgag
gaactgaagcctcggaacaagaaatggtga

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