Labeo rohita (rohu): 127167317
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Entry
127167317 CDS
T09007
Symbol
slc6a22.2
Name
(RefSeq) solute carrier family 6 member 22, tandem duplicate 2 isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
127167317 (slc6a22.2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lroh02000
]
127167317 (slc6a22.2)
Transporters [BR:
lroh02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
127167317 (slc6a22.2)
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
127167317
NCBI-ProteinID:
XP_050969237
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Position
6:25734405..25744642
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AA seq
626 aa
AA seq
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MTTIFVYIIYVYQPIISIMEHSSRPEVKLNLMNGALVQPRPKPQQREQWANKLEFLLAVA
GHIIGLGNVWRFPYLCYKNGGGAFFVPYVLFLFTCGIPLFFLETSLGQFTSQGGITCWRK
ICPLFEGLGYGSQVVVLYTGVYYIIILAWAFLYLFSSFSSELPWASCNNYWNTENCREFS
KSNITEYSPEKSSSPVIEFWERRILGLSEGIEQIGNVRWDLALCLLLAWIICYFCVWKGV
KSTGKVVYFTATFPYLMLVVLLVRGLTLPGAKNGIIFYLYPDPTRLTDPQVWMDAGSQIF
YSYGVCTGVLTALGSYNKYDNNCYRDCVYLCLLNSLTSFVAGFAIFSVLGFMADEQGMDI
SMVAESGPGLAFIAYPRAVALMPLPQLWAIFFFIMIIFLGLDSEFVYHEALVTAISDMYP
SFFQIGHRRKFLLLFICAASFLAGLLMVTEGGLYVFQLFDYYACSGMTLLTFAILQSICV
GWVYGADCLYDSIEDMIGYRPWPFMKCCWKYLTPAICTGTFIFSLVKYTPLKFNNVYEYP
WWGYAIGGFFTLSSTLLVPLWMIYLVGTTPGSMRQRVRVLCTPAEDLPDPKSPKQKLNTV
TFETFTDLLTLRTVHTPNLLPHRDIV
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgacaactatatttgtgtatataatatatgtttatcaacccatcattagcattatggag
catagctcaaggccagaggtgaagttaaacctcatgaatggtgccctagtgcagcccaga
cctaaaccccagcaaagagagcagtgggctaataagttggagtttctcttggcggtggca
gggcacatcattggcctgggaaatgtgtggaggtttccttatttgtgctacaagaatggc
gggggggcattttttgtgccgtatgtgctgtttctcttcacctgtgggattccacttttc
tttctggagacctcgctgggtcagttcaccagccagggtggaataacatgctggaggaag
atctgtccactgttcgaaggtctcggttatggcagccaagtcgttgtcctctatactgga
gtctattacatcataattcttgcttgggctttcctttaccttttttcatccttcagttca
gagctgccatgggcgagctgcaacaactactggaacacagagaactgcagagagttcagc
aaaagcaacattacggaatattcaccagagaaaagctcatctcctgttattgagttttgg
gagagaagaattttgggcttgtctgagggtatagaacagattggtaatgttagatgggac
ttggcactctgcctcctgctggcctggatcatctgctacttctgtgtatggaagggagtg
aagtccacaggcaaggtggtgtacttcactgctacttttccctatttaatgttggtcgtg
ctgctggtccgtggacttactcttcctggagcaaagaatgggatcatattctacctctac
cctgatccaacacggctcacagacccacaggtgtggatggatgcaggtagtcagatattt
tactcctatggagtttgtacaggagtactcactgctttgggaagctacaacaaatatgac
aataactgctacagagactgtgtttacttgtgtctgctcaatagcttaactagctttgtt
gctggttttgctattttttccgttctgggcttcatggcagatgaacagggaatggatatt
tcaatggttgcagagtcaggtcctggtttggcgttcattgcttacccccgtgctgtagct
ttgatgcccttgcctcagttatgggcaatcttcttcttcatcatgatcatattcctggga
ctggatagtgagtttgtttatcatgaagccctggtaacagctatctcagatatgtatccc
tccttcttccaaattgggcatcggcgtaaatttcttctcctcttcatatgtgctgccagc
ttccttgctggtctgctaatggtaacagagggtggcctgtatgtcttccagctttttgac
tattacgcctgtagtggaatgactcttctgacttttgccatccttcagtccatctgtgtt
ggatgggtatatggtgcagactgtctctatgatagcattgaggatatgattggatatcgg
ccctggcccttcatgaagtgctgctggaaatatctaacaccagctatatgcacaggaacg
tttatcttctccttggttaaatacacccctttgaagttcaacaatgtgtatgagtacccc
tggtggggttacgcgattggtggcttcttcaccctttcctccaccctactagttccactg
tggatgatttatttggtcggcaccactccagggtctatgcgacagagagtgagagtcttg
tgtactcctgctgaagacctgccagatcctaaaagtccaaaacagaagctaaacactgtt
acttttgagaccttcacagacctattgactttacgaactgttcatacacccaacttatta
cctcacagagacattgtctga
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