Labeo rohita (rohu): 127167810
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Entry
127167810 CDS
T09007
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04136
Autophagy - other
lroh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127167810 (atg13)
04136 Autophagy - other
127167810 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127167810 (atg13)
03029 Mitochondrial biogenesis [BR:
lroh03029
]
127167810 (atg13)
Membrane trafficking [BR:
lroh04131
]
Autophagy
Autophagosome formation proteins
ULK complex
127167810 (atg13)
Atg1 complex
127167810 (atg13)
Mitochondrial biogenesis [BR:
lroh03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
127167810 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
127167810
NCBI-ProteinID:
XP_050970017
LinkDB
All DBs
Position
7:25734426..25750208
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AA seq
536 aa
AA seq
DB search
MDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKISTCSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGDVQLTGLGEGFQTVRVGIVGTPI
GTITLSCAYRTNLALMSSRQFERTGPIMGIIIDHFVERPFTNMAHMHPCSYRAPGEDEGG
TYAGIEDSQEVCTTSFSTSPPSQCVCTISQAHFKTPKPALMATLKVPLMGLGISQQLYSS
RLSYQTPALGTVDLCHPTACTAAAHPHQMVVPGKEGGVPQLPAQPTHGTAAEHGRIPSCP
TGQPPQPAPPTSCNSEVKTVSPSDALEATFTRKVGAFVNKATTQVTTTSLDLPFAAFAPR
AFDLEENDPMVHPPPSPAPSSPLQGSLHSNSSSHSGGQPQDDFVMVDFKPAFSKDDLLPM
DLGTFYREFQNPPQLASLSIDVSAQSMAEDLDSLPEKLAIYEKNIDEFDAFVDTLQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgatctgagcccgcaggacaagaaagatttggataaattcatcaaattcttt
gccttgaagacagtgcaagttatagttcaggcccggcttggagagaagatcagcacttgc
tcatcttcatcaccgacaggttcagactggtttaatctggcaataaaagacatcccagag
gtgactcatgaggcgaaaaaagctcttgctggacagttgcctggcatcggccggtccatg
tgtgtggagatctccctcaaaacctcagagggagactcaatggagctggagacatggtgt
ttggaaatgaatgaaaagtgtgataaggacattaaagtgtcctatacagtttataatcgg
ctgtctctgctgcttaagtctttgctggccatcacaagggtgacacctgcttacaagctt
tcacgaaaacaagggcatgattatgtcatactctacaggatctattttggagatgtccag
ctgacaggtcttggggaagggttccagacagtgcgagtgggcattgtaggcactcctatt
ggcaccatcactttgtcgtgtgcatatcgcactaatttggcactcatgtcttcaaggcag
tttgagaggacaggccctatcatgggtatcatcattgatcattttgtggagcgtcccttt
actaatatggcacacatgcatccctgtagttacagagcgcctggagaagatgagggaggg
acttatgcaggaatagaagactctcaggaggtgtgcaccacatccttttccacctcccca
ccttcacagtgtgtgtgtactataagtcaagcacattttaagacacctaagccggctctg
atggccacactgaaggttcccctcatggggcttggcatctcacagcaactgtacagctct
cgtctgtcatatcagactcctgccctgggaactgtggatttgtgccatcctacagcttgt
actgctgctgcacatcctcaccagatggttgtgccgggtaaagaaggtggagtcccacag
ctgccagctcagcctacacatggcactgcagctgagcatggtcgtatcccatcatgcccc
actggacagccccctcagccggcaccacccacatcttgtaatagtgaggtgaagactgtg
tccccctctgatgctctagaggccaccttcaccaggaaagttggagcttttgtcaacaaa
gccaccactcaggtgacaacaaccagtctggatcttccttttgctgcattcgctccaaga
gcctttgacctggaggagaacgacccaatggtgcaccctcctccatccccagctccttcg
tctcccttgcaaggcagcctgcactcaaacagctcaagccacagcggagggcagccacaa
gacgactttgtcatggttgactttaaaccagcattctcgaaggatgaccttttgccaatg
gatctgggtacattctacagagagtttcaaaaccctcctcaacttgcaagcctgtccatc
gatgtcagcgctcagtctatggctgaggatttggactctcttccagagaagctggccatt
tatgagaagaacattgacgagtttgatgcatttgtggacacgctacaatag
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