KEGG   Labeo rohita (rohu): 127167818
Entry
127167818         CDS       T09007                                 
Symbol
vps13c
Name
(RefSeq) intermembrane lipid transfer protein VPS13C
  KO
K19525  vacuolar protein sorting-associated protein 13A/C
Organism
lroh  Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:lroh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lroh04131]
    127167818 (vps13c)
Membrane trafficking [BR:lroh04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    127167818 (vps13c)
SSDB
Motif
Pfam: VPS13_N VPS13_M VPS13_VAB WWE DUF2076
Other DBs
NCBI-GeneID: 127167818
NCBI-ProteinID: XP_050970030
LinkDB
Position
7:32495186..32542870
AA seq 3331 aa
MVFESLVSDLLNRFIGDYVENLDKSQLKIGIWGGNVVLENLRVKENALSEFDVPFKVKAG
QIGKLTLKIPWKNLYNEAVVATLDGLYLLVVPGATIKYDPAKEERYLQEAKQKELQRIEE
TLQLVARRGSQAGEFVFNLESYVYKNPPRDKGRKLKKRKKPFRRSKKYEHKAEKPQEEKK
DTFAEKLATQVIKNLQVKITSIHIRYEDDVSDPKRPLAMGMTLSELSLQTADENWKTCIL
NEAAKIIYKLGRLECFCAYWNVNSPIFYRGSWEEIVDKLKAGISTKNEELQGYQYIFKPI
FASARMCINPNAEVELKTPKAKLHLEVQNIAIEMTKPQYLSMVDLLESVDCMVKNSPYRK
FRPDVPVQSNARQWWKYSINSILEVHIRRFNQMWNWNNIKKHRNTLKAYKAAYKFKLTQG
KVREDTEKQIQELEKVLDVFNIVLARQQVQMEVIRSGQKLVAKKAATQKQSGGGFFSSFF
GKKEGKKKEEEEDKEPESIDSIMTPEEKTKLYTAIGYSGSSHNLALPKHYVAVIVNFKLL
STSVTFREEPGVPEILKVQMIDLSTSISQRPGAQAIRVEAKLEHWYVTGLQQQGEVPSLI
ASLGDTDSSLLSVLFELNPEDSTADQLLRVHSQPVEIIYDAMTVIGITEFFKTGKGVDLE
VITSATLSKLEEIKEKTATGLSHIIETRKVLDLRIDLKPSYLLLPKSGFYDGKSDLMIVD
FGYLQLNSVDQGSHQQVSASFSSLEEIMDRAYERYSLELRSVQILYSKSGEQWKNARLKG
LTHQHILQPMDFTLQLAKCMVDKDSRMPRFKVSGELPLLHVKISDQKIQGVLELVNSIPL
PQTTSTAPSTPTEKVLGMPLSDARPKVLGLDPTVLSYTVESDTDEDISEKSTDEDSLRST
LEELTEVQFQFEVKAVLLELTRQAAQEDVILALNVSQLGAEGKIRTFDLTVTSYLRKVSL
DYCEIKDSQNMPLHLITSSDKHGSDLLKVEYIKADVNGPSFHTLFNNTEQTLKVEFSSLD
FLLHTKALLSTINYMNSAIPQDLTASKDRETKRRAERAAAGKTVSKGSKDSGVVNFKLSA
VLGSFRVAVCDDRSNIADIRVQGIDASVVVQAKETDVFARLRDIVVLDVDPKTIHKKAVS
IVGEEVFSFKLTLYPGATEGEGYTDTSKVDGKVILRLGCIQIVYLHKFLMSLLDSFSYQY
PSADEMFVDNFQTAKEALTAATAQAAEKAASSVRDFAQKSFRLAMDIRLKAPLIIIPQSS
TSHNAFVVDLGLITVGNSFSLLAAEGFPLPAVLETMDVKLTQLKLSRTVLKHDAAHLDVE
ILEPINLELLVKRNLAATWYSKIPGMEVNGVLMSMNMALGQEDVGVLMRILAENIGEGSK
AAVVERTKASAKDEAVDEGLIETLPVGTESQPALTNGAFTENVVSVLLNFEIKEVMLKLK
KSKNGKECPFLVLHAAQLGINTKVRKYDMEATTYIKTISMKCLEFLDSNQEPLCIISSSA
ESGADLLEVKYFKADRNGPNFASLYQNTEQKINVVFSSLDLMLHTEALLSTMDFLSAALS
DSSLPSPERESKKSDDMRTTSAKSTALSSPSDGDVIDLMVNMQLGAFNVLVCDQKSNMAD
IKIQGLDGSLKMQGTQTHMTTRLRDFIIMNVDPKTIHKKAISIVGDEVFSFSMSLTPKAT
EGAGYTDTSKVDGKVKLNVGCIQVVYLHKFVMSLLNFSNNFQTAKEALSAATAQAAEKAA
SSVRDFAQKSFRLAMNIRLKAPLIIIPQSSTSHNAVEADLGLITVGNSFSLLPVEGRPLP
AVIDNMDIQLTQLKLSRISMEQDSNQPSSKLLEPVNLVLSVKRNLAASWYQKMAALEVDG
DLKPMKVALSQDDLTVLLRILMENIGEASSVQSDAPIASEAALKQESVLVRARTATGSEI
LVEKLSESKLKETELLESVKFSFNVESLGLTLYSNNPAQPSVHEEQLCLGEFMLRKMKTS
GKMFNNGNMEVSTILTTCTLDDRRNGIQRVTSRMLGRRDEETVDPMIDVTYSQNADERSV
VAVLQKLYLCASVEFLLAVADFFMQALPSSPPTHRDKTNQLLLKYVSEPKIQSEPKAAPK
TKLRAVVVDPEVVFVANLMKADAPALVASFQCDFSLMSEDMGQFMKANVRSLKVLACPFI
RKEGDKAETTVLRPCSVVLQTKMPTNAPLTGSITVEEVIVKISPIILNTVITITAAMAPK
PKEEPSQQTSDDLNSLWSLMNVANANYWFLGVDTASEVTESFKDVDSSKDGESFEMNVKV
VQVTLESGLGHRTVPLLLAESSFTGTAQNWSSLLSVSADMTLEVNYFNETHAIWEPLLER
VDSGKRRWNLKLDMKNNPVRDKSPVPGDDFVMLPEPRTAITICSKDTMNITVSKCCLSVF
NNLAKAFSESTASTFDHSLKEKSPYTIRNALGIPLIVQHSANLRLTGSSAPGKLHELAVD
KSVDLEHSSFERSARLSALQRQESCLFNLSVVPTGYSEISNIPLGKPGRRLYNIRGPMQQ
DAVSVLLQIDASEGNKVITVRSPLQIKNHFSVPFAILKYSSELGVMVNVGVAEPEKECHV
PLEAYRSQLFLLPVGPLEDLYRASATCIAWKEQVHVSSEVHAVLQCPAIDSSFLPLVVNT
LAMPDDLSHIASHGEGDWDPAYVIHLHPAVTLKNLLPYSIRYLLEGSADFCELQEGSAAD
VLNSNVGGEIMELVLIKYQGRNWTGRMRINKELPEFLSICFTSDTSEGLTVDLWVHVSRV
SGKIVLSIFSPYWIINKTSRVLQYRAEDKCVKHPSDFRDVILFSFKKKNFFSKNKLQLCV
STSSWSDGFSLDTVGSYGCVRCPDKNGDYLVGVSIQMSSFNLTRIVTMSPFYTLVNKSSF
ELEVGEVQNNNGSSSKWHYISSTECLPFWPESSTGKLCVRVVGSESSSKSFFFNKQDNGT
LLRMEQYGGVIVDVNISDHSTVISFTDYYDGAAPALVVNHTPAATVNFRQRGCEESWALR
PGEAQRFAWDDPAGVRKLCWSCEDHSGELDLVKDECGQFAYSSLVQIHWVSFLDGRQRVL
IFTEDVGIVTKARQAEELEQFQQEVNISLRNLGLSLINNDIRQEIAYVGITSSGVVWEMR
PKNRWKSFNHKNIELLEKAYQAHINSKSEPGWIRLETGLEVNFGRFPMLMRQPYSCTIRR
NFLPGIRIELKQSPHQRSLRAQLYWLQVDNQLPGAIFPTVFHPVPLPKSIVQDSEPKPFI
DVSIITRFNEHSQVMQFKYFMALVQEMAVKIDQGFLGAILALFTPATDSQDGKEKNKLIE
KDLEALQAQLMESSMTDTSGLSFFEHFHISP
NT seq 9993 nt   +upstreamnt  +downstreamnt
atggtgttcgagtctttagtcagtgatctcttgaacagattcataggagattatgtggaa
aacctggacaagtcgcagttaaagattggcatatggggaggaaatgtggtgttggaaaat
ctgagggtgaaagaaaatgctttgagtgagtttgatgttccttttaaagtaaaggctggt
cagattggtaaactgactctgaagatcccttggaaaaacctgtacaatgaagctgtggtg
gctacattagatggattataccttctggtggttcctggtgcaacgattaagtatgatcca
gctaaagaagagcgttacctgcaggaggccaaacagaaggagctgcagcgcattgaggaa
accctgcagctggttgcacgcagaggctctcaggctggagagtttgtgtttaatctggag
agttatgtgtataagaatccaccacgggacaaaggacgtaagcttaaaaagcgtaaaaaa
ccctttaggagatctaaaaagtatgagcataaagcagagaagccacaggaagaaaagaag
gacacatttgctgagaaactggctactcaagttatcaaaaacctccaggttaaaatcacc
agcattcacatcagatatgaggatgatgtgtcagatcctaaaagacctcttgctatgggc
atgactctttcagaactcagtctacagacagcagatgaaaactggaagacttgcattctg
aatgaagcagctaagattatctacaagctgggccgcctcgagtgtttttgtgcctattgg
aacgtgaacagcccaatcttctacagaggctcctgggaggagatagtggacaagctaaaa
gcaggaatcagcacaaaaaatgaggaactgcaaggctatcagtacattttcaaacccata
tttgcctctgcaaggatgtgcatcaaccctaatgctgaagttgagctgaaaacacccaaa
gcaaaactacaccttgaggttcagaacatcgcaattgagatgaccaagcctcagtacctg
tctatggtggatctgctggagtctgtagactgcatggtgaagaacagcccgtatagaaag
tttaggcctgatgttccagtccaaagtaacgccaggcaatggtggaaatacagcatcaac
agtatactggaagtgcatatcaggcgctttaaccagatgtggaactggaacaacatcaag
aagcacaggaacacactgaaggcctacaaagctgcatacaaattcaaactcacacagggt
aaagtcagagaagacacagaaaagcagatccaggagctggagaaggttctggatgtgttc
aacattgtattggccagacaacaggttcagatggaggtgattcggtcaggacagaagctg
gttgcaaaaaaggctgccactcagaaacagagtggaggaggcttcttcagcagctttttt
ggcaagaaagaagggaaaaagaaagaggaagaggaggataaagagcctgagagtattgat
tccatcatgactcctgaagagaaaacgaaactctacacagccattggctacagcgggagc
tctcataaccttgccttaccaaaacattatgtagctgtgatcgtcaactttaaactgttg
agcacctcagtaacattcagagaggagcctggcgttccagagatcctcaaagtgcaaatg
attgacctcagtacgtccatctcacaaagaccaggagcacaggccatcagggtggaggct
aagctggagcactggtatgtgactggtctgcagcagcagggtgaagtgccatctctcata
gcgtcactcggagacacagactcctccttgcttagtgtgctctttgagctcaatccagaa
gacagcactgctgaccagctcctcagagtccactcacagcctgtagagatcatctatgat
gccatgactgtcatcggcatcacagaattctttaagacgggaaaaggagttgatctggag
gtcatcacctcggccacactcagcaaactggaggagatcaaagagaagacagctactggc
ttgtctcacattattgagacacgtaaggtgctggacttgaggattgatctaaaaccctcc
tacctgctgctgcccaagtctggattctatgatggcaaatcagacctcatgattgttgat
tttggttacctgcagttgaacagcgtagatcagggcagccatcagcaggtgtctgccagt
ttctcatcactagaggaaatcatggatagagcatatgaaagatattccttggagcttcgc
agtgtccagatactctacagcaaatcaggagaacaatggaaaaacgctcgtcttaaaggc
ctcacccatcagcacatcctgcagccgatggacttcacacttcaactcgctaaatgtatg
gtggacaaagactcccgtatgcccaggttcaaagtatcaggtgagctgccgttacttcat
gtgaagatttctgatcagaagatccagggcgttctggagctggtgaacagtattcctctc
cctcagactacctcaacagcccctagcactcctacagaaaaggttttggggatgccgctg
tctgatgccaggccaaaggtcttgggtttagaccccacagttctatcctatactgttgag
tcagacactgatgaagacatcagtgagaagtctacagatgaagactctctcagatcaacc
ttagaagagctaactgaagtgcagtttcagtttgaagtcaaagcggtgttgttggagctt
accaggcaggccgctcaggaggatgtcatattggctctcaatgtgtctcaactgggtgcc
gaaggcaaaatacgaaccttcgatctcaccgtcacatcttacctgcgcaaagtaagcctg
gactactgcgagataaaagattcgcaaaatatgccacttcatctaatcacctcttcagac
aagcatggctctgatctattgaaagtggagtacatcaaagctgatgtgaatgggcccagc
tttcacaccttatttaataatacagaacagacactgaaggtggagttttcttcattggac
ttcctgttacacactaaagctttgctgtctaccatcaactacatgaattcagcaatacca
caagatctcacagcttcaaaagacagagaaaccaagagacgagctgagagagcagcagca
gggaagacagtttctaagggttcaaaggactctggtgttgtgaactttaagctgtccgcc
gtacttgggtctttcagagtggctgtttgcgatgacagaagcaacattgctgacatccgg
gttcaaggcattgatgcatctgtggtggtccaggccaaagaaacagatgtttttgcccgt
ctgcgtgacattgtggttcttgatgtggaccctaagactatccataagaaggcggtgtca
atcgttggagaagaggtgttcagcttcaagttgaccttgtatcccggtgccactgaaggt
gaaggctacactgacacctccaaagtggatgggaaagttatcctgagacttggctgtatc
cagatcgtctacctgcacaagttccttatgtctttattggactcttttagctatcagtac
ccctctgctgatgagatgtttgtggataacttccagacagctaaagaggctctcactgcc
gccacggctcaggctgcggagaaagcagcttccagtgtgagggatttcgctcagaagagt
tttagacttgccatggacatcagactgaaggccccccttatcataatccctcagtcctcc
acatcccataatgcatttgtggttgacttgggtctcatcactgtgggaaacagcttctca
ctgctggcagctgagggcttcccattgcctgcagttttggagaccatggacgtaaaactc
acacagctcaaactatctaggactgttctgaagcatgacgctgctcatctagatgttgag
attctggagcccataaatctggagcttttagtcaagcgtaatttggctgccacttggtac
agcaaaattcctggaatggaggtcaatggagtgcttatgtcaatgaacatggctcttggc
caggaggatgttggggttctcatgaggattctagcagagaacattggagagggaagcaag
gctgctgtggtggagagaacaaaagcttctgctaaagatgaagctgtagatgaaggactg
atagagacacttcctgtggggacagagagtcaacctgcattgaccaatggtgctttcact
gagaatgttgtcagtgtgctcctcaattttgaaatcaaggaggttatgctgaagcttaaa
aagtccaaaaatgggaaagagtgtccctttttggttctccatgcagctcagcttggaatc
aacactaaagttcgaaaatatgacatggaggccacgacatacatcaaaaccatctccatg
aagtgcctagagttccttgattcaaatcaagaaccactctgtataatcagttcctcagca
gaatcaggagcagatcttcttgaagtcaagtattttaaggctgatcgaaatgggcctaac
tttgcaagcctttaccagaacactgagcagaagatcaatgtggtgttctcctctttagac
ttgatgctgcatactgaggctctcctctctaccatggacttcctgtctgctgccctgtcc
gacagcagtctgccctcacctgagagagagagcaaaaagagtgacgatatgagaactacc
tcagctaaatccactgcactaagctctccctctgatggggacgtcattgacctgatggtg
aacatgcagctcggagcatttaatgtgttggtttgtgaccagaagagcaacatggcagac
attaagattcagggtttggacggttctctaaagatgcaaggaactcagacacacatgacc
acacgtttgcgcgacttcatcatcatgaatgtggatcctaaaacaattcacaaaaaggcc
atctccatcgtaggcgatgaggtgttcagcttcagcatgagtctgacccccaaagccact
gagggggctggatatacagatacttcaaaggtcgatggcaaagtgaaactcaacgtgggc
tgtattcaagtggtctaccttcacaaattcgtcatgtcgttactgaatttcagtaataac
ttccagacagctaaagaggctctcagtgccgccacggctcaggccgcagagaaagcagct
tccagtgtgagggatttcgctcagaagagtttcagacttgccatgaacatcagactgaag
gccccccttatcataatccctcagtcctccacatcccataatgctgtggaggcggacctc
ggtctcattactgtgggaaacagcttctctctgctcccagtggaaggtcgtccgctgcct
gctgtcatagataatatggatatacagctcacacagctaaaattgtccagaatttccatg
gagcaggactcaaatcagcctagttcaaaactgttggagccagtcaaccttgttctatct
gttaaacgaaacctggcggcatcatggtaccagaagatggctgccttggaggtggatgga
gatctgaagccaatgaaggtggctctgagtcaagatgacctgactgtcctgctgcggatt
ctgatggagaatatcggagaggcgagcagtgttcaatctgatgcaccgatcgcctcagag
gcagccctcaaacaagagagtgtgcttgtcagagcacgtacagcgactggctctgagatt
cttgtggagaagctgtctgaaagtaaactgaaggagaccgagctgctggagagtgtcaaa
ttcagctttaatgtggagtcccttggtcttactctctacagtaacaatcctgcacagccc
tctgttcatgaggagcagttgtgtttaggtgaattcatgctgcgtaaaatgaagacttca
ggcaaaatgtttaataacggtaacatggaggtctccaccatcctcaccacatgcacgctg
gatgacaggaggaacggtattcagagagtcacatccaggatgctgggaaggcgtgatgag
gagacagtagatcccatgattgatgtgacatactctcagaatgcagatgagcgctcagtg
gtcgctgttctgcagaagctctatttgtgtgctagcgtggagtttctgttggctgtggcc
gacttttttatgcaagccctgccttcaagtccacctacacacagagacaaaaccaatcaa
ctgctactcaaatacgtctcagagcccaaaatccagagtgaacctaaagcagctccaaaa
accaaactacgagcagttgtggtggacccagaagttgtgtttgtggctaacctgatgaag
gcagatgctcctgcactagtagcctcattccagtgtgattttagcctgatgtctgaagac
atgggacagttcatgaaggccaacgtcagaagcctcaaagtgctcgcctgcccctttatc
aggaaggagggtgacaaagctgagaccactgtgctgagaccatgctctgttgtacttcag
accaaaatgccaaccaatgccccattaactggttcaataactgtagaggaggtcatagta
aaaatctctcctatcattcttaacactgtcattaccatcactgcggccatggcacccaaa
cctaaagaagagccgtcacagcagacgtccgatgacctaaacagcctctggtctttgatg
aatgtcgctaatgcaaactactggttccttggcgtggatacagcctccgaggtcactgag
agcttcaaggatgtggacagcagtaaggatggagagagttttgagatgaacgtgaaggtg
gtgcaggtcacgctggagtcaggtttggggcatcggactgttcccctgctgcttgcagag
tcgtcattcaccggtactgctcagaactggtcatcattgctcagcgtctctgctgatatg
acactggaggtgaattacttcaatgagactcatgcaatttgggaaccactgcttgagaga
gtggacagcgggaaacggaggtggaaccttaaattagatatgaagaacaaccctgttcga
gataaaagtccagttcctggggatgattttgttatgttgccagagcctcgcacagccatc
accatatgttccaaagacaccatgaacatcacagtgtccaagtgctgcctcagtgtcttc
aacaacctggctaaggcattctcagagagcacagcttccacatttgatcattctctgaag
gagaaatccccatacaccatccgcaatgcattaggcattccactcattgttcagcacagt
gctaacctgcgtttgactggctcatccgcaccgggtaaactgcacgaattggcggtggat
aaaagtgtggatttagaacattcatcctttgagcgttcagcacgactgtctgccctgcag
aggcaggaaagctgcttattcaatctcagcgtagttcccacaggctacagtgagatttca
aatatcccgttgggtaagcctggccgcagactgtataatatcagaggacccatgcaacaa
gatgcagtgtctgtactgctacagatcgatgccagcgagggcaacaaggtcatcactgta
cggtcccccctacagataaagaaccatttctcagtgccttttgccattctgaagtattct
tctgaacttggagtgatggtgaatgtaggggttgctgagccggagaaggagtgtcatgtt
cccctagaagcttacaggagtcagttgttcttgctgcctgttggtcctttagaagatttg
tatcgtgcatccgccacatgcattgcctggaaggagcaggtgcacgtgagctcagaggtt
catgcggtgctgcaatgccccgccatagacagcagcttcctgccactggtggtgaacaca
ctggccatgcctgatgacctcagccacattgcgagccatggggaaggggactgggaccct
gcttatgtcatccacctgcacccagctgtcactctcaaaaacctgctaccttactcaata
cgctacctgctggagggttctgctgacttttgtgagcttcaggagggcagtgcagcagat
gtgctgaactcgaatgttggcggtgaaataatggagcttgttttgatcaagtaccaaggt
cgcaactggactggacgtatgaggataaacaaagaattgcctgagttcttgtccatctgc
ttcacctctgacacatcagaaggactgaccgtggacctgtgggtgcatgtgtctcgagtg
agtggcaaaattgttctctccattttcagtccgtactggatcatcaataagacgtcccgt
gtgctgcagtatcgtgcagaggataaatgtgtgaaacacccatccgacttcagagacgtc
attctgttttccttcaaaaagaagaatttcttcagcaagaataagttgcagctctgtgtg
tccaccagctcgtggtctgatggcttctcgctggacaccgttggcagctacggatgtgtt
cgttgtcctgacaaaaatggggactacttggttggggtcagcatccagatgagcagcttt
aatctgacacggattgttactatgagtcctttctacacactagtcaataagtcctcgttt
gagctggaggttggagaggtgcagaacaacaatggctccagctccaagtggcactacatc
tcctccactgagtgtctgcctttttggcctgagtccagcacagggaagctgtgtgtacga
gttgtgggatctgaatctagctccaaatcgttcttcttcaacaagcaggacaacgggact
ctgctgcgcatggagcagtatggtggcgtgatagtggatgtgaatatctcagaccactcc
actgtcatcagcttcactgattactatgatggagctgcacctgctttggttgtcaatcac
acacctgcagccactgtcaacttcagacagagaggctgtgaggagtcttgggcactgaga
ccgggtgaagctcagcgttttgcatgggatgatccagcaggggtgcggaagctttgctgg
agctgtgaagaccacagcggagaactggaccttgtgaaggacgagtgcgggcagtttgct
tacagcagcttagttcagatacactgggtgtctttcctggacggccgtcagcgggtgctg
atcttcaccgaggatgttggcatagtcacaaaagcacggcaggcggaagagctggagcag
tttcagcaggaagtcaacatctcattaaggaacctgggcctgtcactcatcaacaatgac
atcaggcaggagatagcatacgttggcatcaccagttctggtgtggtttgggagatgaga
ccaaagaaccgctggaagtcctttaaccacaagaacattgaactgttggaaaaagcctac
caggcccacatcaacagcaagagtgaaccaggctggatcagactagaaactggcctagag
gtgaactttggaagatttcccatgttgatgagacagccatattcctgcactatcaggaga
aacttcctgcctggcattcgtatcgagttgaaacagtcgcctcaccagaggagtttacgt
gcacagctctattggctacaggtggataatcagctgccgggagctatatttcctactgtg
tttcatcctgttcctcttccaaaatctattgttcaagactcagaaccgaagccgtttatc
gacgtgagcatcatcacaaggtttaatgagcacagccaagtcatgcagtttaagtacttt
atggcattagttcaggagatggcagttaaaatcgatcagggcttcttaggagcaatcctc
gccttgtttaccccagcgaccgactcccaggatggtaaagagaagaataagctgatagag
aaggatctggaggcactgcaggctcagctgatggagagctccatgacagacacctcgggc
ctgagcttctttgagcatttccacatctccccc

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