Labeo rohita (rohu): 127168004
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Entry
127168004 CDS
T09007
Symbol
ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127168004 (ctr9)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
127168004 (ctr9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
TPR_19
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_10
TPR_17
TPR_7
TPR_11
TPR_6
ARM_TT21_5th
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
127168004
NCBI-ProteinID:
XP_050970435
LinkDB
All DBs
Position
7:7276430..7291909
Genome browser
AA seq
1167 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYFREARDVFAQVREATAEISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKYQNTEVL
LYLARALFKCGKLQECKQTLLRARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLSKAGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEEKE
HRAKQEQERDLLRQQMLKEQEERKSKEAEEQKKLLEQRAQYVEKTKNLLNFSEAMKAAAK
EKKKASSGRRKKGGDFDDFVNDDSDEDLPIKKKKKKKSGSGSEVEDEGEDGEKKPRKKRK
RPAKREDEGSDDEEGGSRPKKQRKPRDRKKIEKPKPERMPPSLKGKIKSKAIISSSDSSS
DEDGLKIAEDRNPRDSGSGSDDDDNHHNERHRKRIASDSDSNEERNQSGSEPGSPQRSGN
SDEDESGSERPVKRRRPQQQSDSEQSDNESKKSRSEGSDDESPPGSPAAASDRGSENEGS
PQRSDNDSEPEGSNNEASNRGSDDDSD
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggatccattgaaatccctctgcgggacacagatgaggttattgagcttgac
tttgaccagcttccagagggagatgaagtcatcagtatcctcaaacaggaacacacacag
ctgcacatatggattgcactggctttggagtactacaaacaaggcaagacagaagatttt
gtcaagttgctggaggcggcacgcattgatggaaacctcgattacagagatcatgagaag
gaccagatgacctgtttggacacactagcagcttattatgtccagcaggctcgaaaagag
aagaataaagatgcaaagaaggacctcatcaaccagtccactcttctgtacaccatggca
gacaagattatcatgtatgatcagaaccatctgctgggaagagcttgcttttgtctcttg
gaaggagataagatggatcaggcagatgctcagtttcagtttgtgcttaaccagtcaaca
aacaacatccctgcactcctgggtaaggcgtgtatctccttcaacaaaaaggactacaga
ggagctctagcctactacaaaaaagctcttcgcactaatcctggctgtccagctgaggtg
agactaggaatgggccactgctttgtcaagttaaacaaactggagaaagctcgcttagca
tttggcagagctcttgagctcaactccaaatgtgtgggagctttggtgggtttggctgtt
ctggagctcaacaacaaagaggccgactccatcaagaacggtgtgcagctgctttccaga
gcctacaccattgaccccagcaaccctatggtgctcaatcacctcgccaatcatttcttc
ttcaaaaaggactacagcaaagtgcagcatctggctcttcatgcttttcacaacacagag
gtggaggctatgcaagcagagagctgctatcagttagctcgttccttccacgtccaggag
gactatgaccaggccttccagtactactatcaggccactcagtttgcttcgtctactttt
gtactgcccttcttcggcctgggccagatgtatgtatatcgtagagacaaggagaatgct
gcgcagtgctttgaaaaggtcctgaaagcttatcccaacaattatgaaaccatgaagatc
cttggatcactctatgccacatcagatgaccaggagaagagagacattgctaaagaacat
ctgaaaaaagtcacagtacaatattccgatgatgtggaagcctggattgagctcgcccaa
attttggaacaaacagacattcagggtgctctttcagcttatggcaccgccactcgtatc
ctccaggagaaggtccaagctgatgttccccctgagatcctcaataatttgggagcttta
catttcagattgggaaaccttggcgaggccaagaaatatttcctggcttctttggagaga
gcaaaagctgagggcgagcatgatgagcattactacaacgccatctccgtcacaacctcc
tataacctggccagactgtatgaagccatgtgcgagttccacgaggctgagaaactctac
aagaacatcttgagagagcatcccaactatgtggactgttacttgcgtcttggagcgatg
gcacgtgacaaaggaaatttctacgaagcttccgactggtttaaagaagctcttcagatc
aatcaggaccaccctgacgcctggtctctgattggtaaccttcacttggcaaagcaagag
tggggtcctgggcagaagaagtttgaacgcatccttaaacagccctccactcagaacgac
acctactctatgctggcgctgggcaatgtatggctacagacgctgcatcaacccactaga
gacagagaaaaggaaaagcgtcaccaggatcgagctttggcgatctacaaacaagttctg
aggaatgattccaaaaatctgtatgctgccaatggcataggtgctgtgttggcacataag
ggttatttccgagaggcacgagatgtttttgcccaggtcagagaggcaacggcagagatc
agtgatgtctggctgaatctcgcacacatctatgtggagcagaagcagtacatcagtgct
gtgcagatgtatgaaaactgcttgaagaaattctacaaatatcagaacacagaggtactg
ctctatctggcccgagcgctcttcaaatgtggcaagctgcaggagtgcaaacagactctt
ctgagggctcggcacgtggcacccaatgacacagtgctgatgtttaatgtggcgctggtg
ctgcagagattggccacgctggtgctgaaggatgagaagagtaatctgaaagctgtattg
agtgcagtgaaagagctggagttggctcacaggtacttcagctatctcagtaaggctgga
gacaaaatgagattcgacctagcgctggccgcaagcgaagccaggcagtgttccgatttg
ctaagccaggctcaataccatgtggcccgagctcgtaaacaagatgaggaggagaaggag
caccgcgccaaacaggagcaggagagagacctactgcggcagcagatgctgaaagaacag
gaggagaggaagagcaaagaggccgaggagcagaagaagctgcttgagcagagagcccaa
tatgtggagaagaccaagaacctgctcaacttctcagaggcaatgaaagcagcagcaaag
gagaagaagaaagcaagcagtggacggcgcaagaaaggaggtgactttgatgactttgtc
aatgacgactctgatgaggatctgccaatcaagaaaaagaagaagaagaaatctgggagt
ggcagtgaagttgaggatgaaggggaggacggagagaagaaaccccgtaaaaagaggaaa
agaccagctaaaagagaagatgaaggttcagatgatgaggaaggaggctcaaggcctaaa
aagcagcgcaagcccagagaccgcaagaagattgaaaagcccaagccagagcgcatgccg
ccgtctcttaaagggaagatcaagtccaaggcaatcatttcatcttctgattcttcctct
gatgaggatggtctaaaaatagcagaagacagaaaccccagggacagcggctctggctca
gacgacgacgacaaccaccacaacgaaaggcacaggaagcgtattgcttctgacagcgat
tccaacgaggagcgcaatcaatcgggcagtgagccaggcagccctcaacgctccgggaac
tcagacgaggatgagtctggcagcgaacgcccggtgaaaaggaggagaccacagcagcag
tccgactctgagcagtcagacaacgagagcaaaaagagccgctccgaagggtctgacgat
gaatctccacctggatctccagccgccgcttcagatcgaggctcagagaacgaaggctct
ccgcagaggtccgataacgactctgagccggaggggtccaacaatgaagcctccaacaga
ggatctgatgatgacagtgactaa
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