Labeo rohita (rohu): 127168111
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Entry
127168111 CDS
T09007
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127168111 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127168111 (taf5l)
03036 Chromosome and associated proteins [BR:
lroh03036
]
127168111 (taf5l)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
127168111 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
127168111 (taf5l)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
127168111 (taf5l)
STAGA complex
127168111 (taf5l)
TFTC complex
127168111 (taf5l)
SAGA complex
127168111 (taf5l)
SLIK complex
127168111 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
TFIID_NTD2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Vps41
RMC1_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
PROPPIN
PEP5_VPS11_N
WD40_like
TRIP13_N
Motif
Other DBs
NCBI-GeneID:
127168111
NCBI-ProteinID:
XP_050970638
LinkDB
All DBs
Position
1:15039006..15048192
Genome browser
AA seq
603 aa
AA seq
DB search
MKRVRTEQIQYAVTQYLKRRQYIDTDGSLKGAKLSQSAEEMAASLTVQTESSCANVVSAA
PCQSDPQQYETQFSRLRSFLQDAEAPLVKEVSGVLFPLFLYLHLDMARCGLKGAVDSFYS
RFHSFFQQDPEQKAIVDLLRGAVTPQDVTSNPKLCSLLDHKYVVHLTDQAYSYLLRYLQS
DDNSAICWVLSTHVQVEVTAAHRTDYQLYGAGIGAGNTTSTSSSSTTWTAVDGSEGAERV
EVTAGLPQNEAALEALQDCIKRVREGPPSLTTVCFYAFQHTDQLLNTAEVSADSRLLAAG
FDNSAVKLWSLRARKLKAGPHRADVSKIRLACDVLEEEADDEDASGSEIKTLRAHSGPVY
RTAFLTDGSGLLSCSEDSTVRFWDLNSFTNTVLYRGHAYPVWDVDVSPCSLYFSTASHDR
TARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASVRLFTG
HRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGSLFKDLRGHTDSITSLSFSQDSSLVA
SASMDNSVRVWDIRSAHGTAPNDGSSSELIGQYTGSTSNILNVQFMACNLLLVTGTALEK
QEQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgtacggacggagcagatccagtatgcggtgacccagtacctgaagaggagg
cagtacatagacacagatgggtctctaaagggggccaaactttcccagtcagctgaggag
atggcagccagtctgacagttcagacagagtccagctgtgcgaatgtggtgtccgcagcc
ccgtgtcagtcagacccgcagcagtacgagacccagttctccagactgcgctccttcttg
caagatgcagaagcgccgttagtgaaggaggtgagcggcgttttgtttccgctcttcctc
tacctgcacctggacatggcgcggtgtggcctgaagggggcggtagactcattttacagt
cgcttccactcgttcttccagcaggaccctgagcagaaagcaattgtagaccttttacga
ggagccgtcacgcctcaggatgtgacctcaaaccctaaactctgctcgctcctggatcac
aagtatgtggtgcacctgacggatcaagcgtacagctacctgctgcgttacctacagagt
gacgacaacagtgccatttgctgggtgctcagcacacacgtgcaggtggaggtgacagca
gcacaccgaactgactaccagctgtacggcgcaggcataggagcgggaaacactacctcc
acttcctcttcctccactacatggactgcggtggacgggtcagagggggcggagcgtgtg
gaggtcacggcggggttacctcagaacgaggcggcgctggaggcgttgcaggactgcata
aagcgcgtacgtgaaggtccaccttcgctcaccaccgtctgcttctacgccttccagcac
acggatcagctgttgaacacggccgaggtgtcggcggatagtcgcttgctggcggccggc
ttcgataactctgccgtgaagctgtggagtctgcgggccaggaagctgaaggcgggacct
cacagggccgacgtgtctaaaataagactcgcctgtgatgttctggaggaggaggcagat
gatgaggacgcctcaggcagtgaaataaagaccctgcgtgctcacagcggccctgtttac
cgcacagcgttcctaacagacggctccggtttgctgtcctgttcggaggactccaccgtt
cgcttctgggatctaaacagcttcacaaacaccgtcctgtaccgcggccacgcgtacccc
gtctgggatgtggacgtcagtccctgcagcctgtacttctccacggcgtcccacgaccgc
acagctcgcctctggagcttcgcacgcacgtatccgctccgcctctacgccggccactta
tctgacgtcgactgtgtcaaattccaccccaactccaactacgtggcgacgggctccacg
gataaaaccgtacgcctgtggagcacccaacagggggcgtccgtgaggctgttcaccggg
caccgtggtcccgttctgtcactcgccttctcgcccaacggcaagtacttggcgtcggca
ggagaggatcagagactgaagctgtgggacctggcgtccggcagcttgttcaaagacctg
cggggtcacaccgacagcatcaccagtctctccttcagccaggacagcagtctggtggcc
tcggcctctatggacaactctgtgcgagtgtgggacatacgcagcgctcacggcacagct
cccaatgacggctccagcagcgagctgattggacagtacacaggcagcactagcaacatc
ctcaatgtgcagttcatggcctgtaacctgctgctggtgacgggcactgcgctggagaaa
caggaacagtga
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