Labeo rohita (rohu): 127168473
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Entry
127168473 CDS
T09007
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127168473 (lingo1b)
Membrane trafficking [BR:
lroh04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
127168473 (lingo1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRRNT
LRR_9
V-set
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
127168473
NCBI-ProteinID:
XP_050971336
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Position
7:complement(19347065..19361815)
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AA seq
622 aa
AA seq
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MTFLQVTIKMVAREASGHSYLVACWQPILILMLGTVLSGSATGCPSRCECSAQERSVVCH
RRKLIALPEGIPTDTRLLDLSKNRLKAINPEEFLNYQHLEELQLNENIISVIEPGAFSNL
LGLRILGLRNNKLKLIQLGVFTGLSNLTRLDISENKIVILLDYMFQDLYNLKELEVGDND
LVFISHRAFHGLSSLEQLTMERCNLTSVPTEAFSHLHNLLTLRLRHLNINIIRDFSFRRL
YRLKVLEIANWPLLETLTTKSLHGLNITTLSITNCNLTAVPYEAIQHLVYLRFFNLSFNP
IEVVEGNKMHNLLRLQAFHLVGGRLVSIEPYSFRGLNYLRVLNVSSNSLSTLEESAFHSV
GNLETLALHDNPLACDCRLLWVFRRRWRLNFNRQQPSCESPEFLQGKEFKDFPDVLPPNY
FTCQKSKIRDHKAIHRFVDEGTTVQFPCQADGDPAPMIMWQSPKKQFITTKSIGRLSVSS
DGTLEVRYAQIQDNGTYTCIAVNAGGNDTRLAHLHVHSYSPNWPHQPNKTFAFISNQPND
SGANGTGATDPFPFDMKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYV
PRKVDGDSSPTEGSHKISMKMI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttctgcaggttaccatcaaaatggtggccagagaggcaagtgggcacagctac
ctggtggcgtgctggcagcccattctcatcctgatgctgggtacagtgttgtccggctct
gccaccggctgcccctctcgctgcgagtgcagtgcccaagagcgctcagtcgtgtgccat
cggagaaagctgatcgccctccccgagggaattcccactgacacgcggctgttagatctc
agcaagaaccgcttgaaagccatcaacccggaggaatttctcaactaccaacacctggag
gagctgcagcttaacgagaacatcatttccgtcattgaaccaggggccttcagcaacctc
cttggcttgcgaatactgggactacgcaacaacaagctgaagctgattcagctgggtgtt
ttcactggcctcagtaacctcactcgattagatattagtgagaacaaaattgtcattttg
ttggactacatgtttcaagatctctacaacctaaaagaactggaggtgggggacaacgac
ctggtgtttatctcccacagagcttttcacggcctcagcagcctggagcagctcactatg
gaaaggtgcaacctgacctctgtgccaacagaggccttcagtcatctccacaacctgctg
accctcaggctgcggcatctcaacatcaacatcattcgagacttttccttcaggcggctc
tatcgactcaaagtcctagagatagcgaactggcctcttttagaaaccttgaccacaaag
tccctccatgggcttaacatcacaaccttgagcatcacaaactgcaatctcactgccgtc
ccttacgaggccatccagcacctggtgtaccttcgctttttcaacctgtccttcaatccg
attgaggttgtggagggcaacaaaatgcacaatttgctgaggctccaggcatttcacttg
gtcgggggccggctagtcagcatcgagccttattccttcagaggactcaactaccttcgg
gttctcaatgtatccagcaatagtctaagcactttagaggagtctgccttccactcggtc
ggcaacctggagacactggctcttcatgacaaccctctggcatgcgactgtcgtctcctc
tgggtctttcgccgccggtggaggcttaacttcaaccgccagcagccatcttgtgaatcg
ccagagtttttgcagggtaaagaattcaaagacttcccggatgttctcccaccgaattat
ttcacctgtcagaaatccaagatccgggatcacaaagccattcatagatttgtggatgag
gggaccactgtccaatttccttgccaagcagatggagaccccgctcccatgattatgtgg
cagtctccaaaaaagcaatttatcaccactaaaagcatcggccggctgtctgtgtcttcg
gacggcaccctagaggttagatacgcccaaatacaagacaacggcacatacacctgcatt
gccgtgaacgcaggaggcaacgacacccgtttggctcatctacatgttcatagctactct
ccaaattggccccatcagcccaataagaccttcgctttcatctcgaaccagcccaatgat
agcggtgccaatggaactggtgctacggatccctttccatttgatatgaagactctcatt
atcgctaccaccatggggtttatctctttcctgggagtggtgctgttctgtctggtgctc
ttgttcctctggagccgagggaaaggcaacgccaagccaaacatcgagattgagtatgtg
ccacggaaagtagacggagacagcagcccgaccgagggatctcacaagatcagtatgaag
atgatataa
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