Labeo rohita (rohu): 127168539
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Entry
127168539 CDS
T09007
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127168539
Membrane trafficking [BR:
lroh04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
127168539
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_8
TPR_7
TPR_14
TPR_16
TPR_NPHP3
SH3_1
TPR_10
TPR_19
SH3_9
ARM_TT21_4th
SH3_2
Motif
Other DBs
NCBI-GeneID:
127168539
NCBI-ProteinID:
XP_050971441
LinkDB
All DBs
Position
7:complement(15382135..15403959)
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AA seq
1332 aa
AA seq
DB search
MSAAVRRNSSKTGDGMEPNPNGIRTIRRELSNEYTHNEWDNIMESSSRGRDAGEQHDRHF
KTSRGSIKGTSGASDDNIPTVLAMQLAMVEGPDRLPADEGTQEVLCRKLCVLEADLSGVV
TLISELSAHFVSINSEERTIFITFKTLEEIWKFSTYHKMGYLGQCMENLLMNQEFWLISL
DQHSGIEISIKEETLNLMYKGFLMQEGSFFGCCTANQMFDSSTSGSDLYLEKGDIALFEP
PFLGSGWTVMSLADGARGTKPKPALEPVIPFHEWFLKSCPESVLVGGGKDTSDLPFQIAV
GVCEATEEYDADGPDELSFQAGERIIILGVLVAFFDWFMGRLERTGDVGLVKTNLVKTTG
SFCESSDIFLKDEDRQIVTLDQEKIKEDTIALLKKICQSDVGTNYKLDLAKEIPGSVQTT
THQTELDNLKQKAKHILSEVGESQRNDVSSVSIKQQMKKEDDDTRASRKTPRFSVCSEKD
STSPDEHHSLLSFLSSRDHQPEFLLLYSAYPEFLISHFEGHSDEEEIVAYLGAARELARK
KRVLWAQSRICFLLGQLCAGRSKFSQARVYYEEALNVPRDCFTDMFLLSAIYSNLALIYL
TQKNPEKFFSFSERFSALLMAVPDCLFGCEDPEVLKYVLKKAILAKNQPAEARACFLLAK
LHLKLKDGTSAIPFIERLLIIADEVPEACDETLSHVFLVLARLYSDQRLPHLTESCAKRA
SLQVGATVSHCLCSVSLLLENASELYGVAIPTQVAPYLTRAAALVPSREEPVLVHVHALC
LSWLFHRHSMPDRAVRYMSAVLDHSGMSSIGNSDATAALLWLAWLYICNQQPGTALKVLD
AVLSSLPEHCTTQLEGVVYNMRAISYRRSADIRQAAESYRAAIEICEEFEDRHNWAVALA
NFGFMCLQIKAKRLAEEYLTQSVELFSELEDEGHEHSFILVLLELGKHFVSQGNHENGKI
YYEWALLIAMFISHIDSQLQATRHLCQLYEEVCPDEAQCIIYNEHQLNLLQQTGDKSLEG
EILEKISQLYLNLATEKASRAALEYTKQSLGIFIDLGKKRKEAHAWLKAGKIYHILQQTE
LVDLYVQVAQDMALSTGDTLFTLEMLEAAGDVFFNSSQDREKAICFYRDRALPIAVKTSS
VRSQLRLCNKLSELLLQLGQCSEAIEFTQTALDISISLADSLNERVAFHRLATLYHCLGQ
FEMAEHHFLKALSLCPSPLRYDEEALYYVRVYKTLGDIIFYDVKDPFDAAGYYHLALAAA
MDLGNKRSQLELCTQLATIYHNFLMDRELSLFFYQRARAFANDLHIRRINLAPDYSFRTT
AQYKNTITGATR
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgctgttcgtagaaactcgtccaaaaccggggacggcatggagcccaatccg
aatggaattcggacgatacgcagagagctgtcgaatgagtatacacacaatgaatgggat
aatattatggagtcttcatccagaggtagggacgccggtgagcagcacgaccgccatttt
aagacctcgagaggaagcatcaagggtacttcaggagcttctgatgataatataccaaca
gttttggctatgcagctggctatggtggaggggccagatcgacttcctgctgatgagggc
acacaggaagtgctttgcaggaaactttgtgtgctggaagctgacctctcaggggtcgta
accttaatctctgaactgtctgctcactttgtatccatcaacagtgaagaaaggactata
tttattacttttaaaacccttgaagaaatatggaagttcagcacatatcacaaaatgggc
tacttgggtcagtgtatggaaaaccttctcatgaaccaggagttctggttaatctccctc
gatcaacattcaggaattgagatctcaattaaagaagagacactaaatttgatgtacaaa
ggcttcctaatgcaagaagggtctttctttggatgctgcacagcaaatcagatgtttgat
agctctacgtcaggtagtgacctttatcttgagaagggggatattgctctgtttgagcct
ccattcctaggatcagggtggacagtaatgtcacttgcagatggggctagaggaaccaaa
ccaaaacctgctctggagccggtcattccctttcatgagtggtttctaaagtcctgccca
gagagcgtattagtgggtggtggaaaggacaccagcgaccttcccttccagattgctgta
ggggtctgtgaggccacagaggagtatgatgcggacgggccagatgaactgagtttccag
gctggtgaacgcattatcatcctgggcgtgctggtggccttttttgattggtttatggga
agactggagagaactggggatgttggacttgtcaaaaccaacttggtcaaaacaaccggt
tcattttgtgaatcatctgacatattcttgaaagatgaggacagacaaattgtaaccttg
gaccaggagaaaatcaaagaggacactattgctttattgaagaaaatatgccagtctgat
gttggcacaaactacaaacttgatctggcaaaagaaattccaggatcagttcaaaccacg
actcatcagacagaattagacaatctaaaacagaaagccaaacacattttgagtgaagta
ggtgagtctcaaagaaatgatgtttcatcagtcagcatcaagcaacagatgaagaaagaa
gatgatgatacgcgggcgtcccggaaaaccccacgtttttctgtctgctcagagaaggac
agcaccagtccggatgaacatcattctctcctctcattcttgagcagccgtgatcaccag
ccagagttcctgctcttgtacagcgcttacccagaattccttatctcacattttgagggt
cactctgatgaggaggagatagtggcgtatttaggcgcagcccgagaactggcgcgaaag
aagcgtgttttgtgggcgcagagccgaatctgttttcttcttggacagctttgtgcaggg
aggtcaaagttctctcaagctcgggtttattatgaggaagccttgaatgtacccagggat
tgttttacggacatgtttctgctctctgccatttactccaacctggcactcatctaccta
acacagaagaaccctgaaaaattcttcagcttttcagaacgcttctctgctttgttgatg
gctgtccctgattgtttgtttggctgtgaggaccctgaggtattaaaatatgtactgaaa
aaggccatcctggccaagaatcagcctgccgaggcccgagcctgcttccttctggcaaag
ctccacctgaagcttaaagacggcacgagcgcaatcccgttcattgaaagacttttgatc
attgctgatgaagttcctgaggcatgtgatgagacattgagccatgttttcctggtgtta
gcaagactctacagtgaccagagactgccacacttgactgaaagctgtgcaaagcgagca
tcacttcaggtaggagccactgtgtcacactgtctttgtagtgtctcgctattgttggaa
aatgcatcagagctttatggagtagccatcccaacacaagtggctccatacctgacccgt
gccgctgctttagtgccctccagggaggagcctgtccttgttcatgtccacgctctgtgt
ttgtcctggctcttccatagacacagcatgcctgacagagctgttcgctacatgtccgct
gtcctcgaccacagtggtatgtccagcattggcaattcagacgctactgcagctctccta
tggctggcatggctgtacatctgcaaccagcaacccggcacagctctgaaagtgctagac
gctgtgctgtcatcgctccccgagcactgcactactcagctggaaggagtagtttacaac
atgcgggccatttcatacagacgttcagcggacatccgacaggccgctgagagttaccgg
gctgcaattgagatatgcgaggagtttgaggatagacataactgggccgtagcgctggcc
aactttggattcatgtgtttgcaaatcaaagcaaagagattggcagaggaatatctcact
cagtcagtggagctgttctcggagcttgaagatgaagggcatgaacacagttttatttta
gtgcttcttgagttggggaaacactttgtttcccagggaaaccatgagaatgggaagatc
tactacgaatgggccctgctgattgctatgtttatcagtcacattgatagccagctgcaa
gccacacgtcacctgtgtcagctatacgaagaagtatgtccagatgaagcccagtgtatc
atctacaatgagcaccagctgaaccttcttcaacagactggagacaagagcttagaggga
gaaatactggagaagatcagccagctgtacctgaacctggctactgagaaagccagtaga
gctgctttagagtacaccaagcagagcttgggcatcttcatcgacttgggcaaaaaacgc
aaggaggctcatgcctggttaaaggcaggaaagatttaccacatcctccaacagacagag
ctagtggacctctatgtgcaggtagcccaagacatggctttgagcacaggagacacactc
ttcaccctggagatgttggaggcagctggagatgtgttcttcaacagttcacaggacagg
gagaaagccatctgcttttacagggaccgagcccttcccatcgcggtgaagacgagcagt
gtgcgctctcagctcaggctgtgtaataagctttcagagcttctgctgcagctgggacag
tgttcagaggccattgagttcactcaaacagcattagacattagcataagtctggctgac
agtttaaatgagcgggtggcatttcatcgactcgcaactttgtaccattgtctgggtcag
tttgaaatggcagagcaccactttctgaaagccctgtccctgtgcccctcacccctgcgc
tatgatgaggaagccctgtactatgtcagggtttacaaaacacttggagacattatcttc
tatgatgtaaaggacccatttgatgctgctggctattaccacctggccttggctgctgct
atggatctgggcaacaagaggtctcagctggagctgtgtactcagttggccaccatctac
cacaactttctcatggaccgtgaactctcgctgttcttctaccagcgagcacgagctttc
gctaatgatctccatattcgtcgtatcaacctggcaccagactacagctttaggaccaca
gcccagtacaaaaacacaataactggggcaacaagatag
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