Labeo rohita (rohu): 127168549
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Entry
127168549 CDS
T09007
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127168549 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lroh03041
]
127168549 (dhx15)
03009 Ribosome biogenesis [BR:
lroh03009
]
127168549 (dhx15)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127168549 (dhx15)
Spliceosome [BR:
lroh03041
]
Complex A
U2 snRNP components
U2 related factors
127168549 (dhx15)
Complex B
127168549 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127168549 (dhx15)
Ribosome biogenesis [BR:
lroh03009
]
Eukaryotic type
90S particles
Helicases
127168549 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Atrophin-1
nSTAND3
AAA_25
SRP54
Flavi_DEAD
DUF3915
AAA_29
Motif
Other DBs
NCBI-GeneID:
127168549
NCBI-ProteinID:
XP_050971462
LinkDB
All DBs
Position
7:4077787..4119689
Genome browser
AA seq
763 aa
AA seq
DB search
MSKRYRLDLGDDYSSSKKRSSDGKDRDRDRDDRSKDRDRDRDRDRDRDRDRERDSKASSA
SLSSSVSGGGMIPLKQTAMNQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILNR
HQSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRGVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTL
PPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTD
IKPEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcggtatcggttggatttaggcgatgattattcatcgagcaagaagaggtcg
tctgatggtaaggaccgtgacagagatcgagacgaccggtcgaaggaccgcgatcgtgac
cgagacagagacagagaccgtgatcgagaccgggaaagagacagcaaggcgtccagtgcg
tccctcagctccagcgtgtccggcggtgggatgatcccactgaagcagacggccatgaat
cagcagatcaaccccttcaccaacctgcctcacacgccacgctactacgagatcctcaag
aaaaggctgcagttgcccgtctgggagtacaaagaacgttttaatgacatcctcaaccgg
caccagagctttgtgctcgttggagaaacaggctctggaaagaccacacagatccctcag
tggtgtgtggatatggtgagggcgctccctggccctaagcgcggtgtggcttgtacacag
ccccgtagggtggcagccatgagtgtggctcagagagtggcagatgaaatggacgtcatg
ctggggcaggaggtcggatactccattagatttgaggactgtagctctgcaaagaccata
ctgaaatatatgacagacggtatgttactccgtgaggctatgaacgacccgctgctggag
cgatatggtgtcattattctcgatgaggctcacgagcgcacattagccacagatattctg
atgggcgtcctcaaagaagtggttcggcagaggtccgaccttaaggtcatcgtaatgagc
gccactctggacgccggaaagtttcaggtttatttcgacaactgccccttgctcaccatt
cccggtcggacgcatcccgtggagatcttctacacgcccgagcccgagagggactacctg
gaagcggccattcgcacggtcatccagatccacatgtgtgaggaagatgagggagatgtg
ctgctattcctcaccggacaggaggaaatcgacgaagcctgcaaacggatcaaacgtgag
attgacgatctcggccctgaggttggcgacatcaaaatcatcccgctctactccacactg
ccaccacaacaacagcaaaggatcttcgagccgcctccaccccgcaaacccaacggagcc
atcggcaggaaggtcgtggtttctacaaacatcgctgagacgtccctgaccatcgatggc
gtggtgttcgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgcattcga
gtcgagtcgctgctcgtaaccgctattagcaaggcttcggcccagcagagagccggtcgt
gctggacgtacgcgcccaggaaagtgcttccggctctacaccgaaaaggcctacaagact
gagatgcaggataacacataccctgagattctcaggtcgaatttgggctctgtggtgcta
cagctcaagaagcttggtatcgatgatttggtgcactttgacttcatggacccaccagct
cctgagaccctgatgcgagccctggagctgttgaactatctcgcggcgctgaatgacgat
ggtgacctgacggagctgggctccatgatggctgagttccctctcgacccccagctggcc
aagatggtcatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgca
atgctatcagtcccacagtgctttgtgcgtcccaccgaagctaagaaggcagccgacgag
tccaaaatgaggttcgcccacatcgacggggaccacctgaccttgctcaacgtctaccat
gccttcaaacagaaccacgagtctgtgcagtggtgctacgataacttcattaactaccgc
tcgctgatgtcggctgataacgtgcggcaacagctctcacgcatcatggaccgattcaac
ctgccgcgacgcagcacggagttcaccagccgagactattacatcaacatccgccgcgct
ctcgtcaccggcttcttcatgcaggttgctcacctggagcgcactggacactatctcacg
gtgaaggacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgag
tgggtcctctacaacgagtttgtgctgaccaccaagaactacatccgcacctgcactgat
atcaaacccgaatggctggtgaaaatcgctccacagtactacgagatgggcaacttccct
caatgcgaggcaaagaggcagctggagcgcatcatcgctaaacttcaaaccaaggagtat
tctcaatactga
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