Labeo rohita (rohu): 127168670
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Entry
127168670 CDS
T09007
Symbol
sorcs2
Name
(RefSeq) VPS10 domain-containing receptor SorCS2 isoform X1
KO
K27082
VPS10 domain-containing receptor SorCS2
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lroh04131
]
127168670 (sorcs2)
Membrane trafficking [BR:
lroh04131
]
Protein recycling
Others
Others
127168670 (sorcs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR_6
InlK_D3
BiPBP_C
DUF6786
Motif
Other DBs
NCBI-GeneID:
127168670
NCBI-ProteinID:
XP_050971651
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Position
7:complement(24870895..25076478)
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AA seq
1161 aa
AA seq
DB search
MKAVIMAVSAHLYPAVFFACAWMSLFGPISCHTGVIIQRNVRDREFDSRGGHVTGRDEPL
ISAHSRGDYSGDPGGPAMGVPRVRRASTPEKVSLLSSSFVLKGDATHNQAMVHWTGENSS
VILILTKYYHADSNKVLESSLWRSSDYGSTYTKLNLMPGTTIIVTNFYICPTNKKKVILV
SSSINERDQMLFISTDEGSSFQRQPVSFTVDTLLFHPSEEDKLLAYSKEAKLYISTDLGH
KWTLLQERITKDRVFWAVTGVDVDPDLVHMEIQDIGGGYLYVTCLIQNCSDKMVTAQFLG
KIDHNSLSVQDEYIFVKVTTGNRTKYYVSYRRNEFVQMRFPKYALPKDVQIVSTDENQVF
LALQEWYQTDTYNLYQSDPQGVYYSIVLENVRSTKQPEENVLIDILEVRGIKGVFLANQK
LDGKVMTLITYNKGRDWEPLAPPTTDMNGKPVSCKQPDCHLHLHLRWADNPYVSGTVHTK
DSAPGLIMGAGNLGSQLVEYKEEMYITSDCGKTWRQVFEEEHHILYLDHGGVIVAIKDTS
IPLKILKFSIDEGRTWSIHNFTSTSVFVDGLLSEPGDETLVMTVFGHISYRSDWELVKVD
FRQSFPRQCTEADYDSWKLTDLQGEKCIMGQERMYRRRKESSFCIKGKSYTSALTAKPCQ
CTEKDFACDYGFERAPSLRLEGDRCYPDFWHDPDAPPENCHLGHSYKSSTGYRKVIANVC
EGGLNKEQSAKQHSCPLLPPRGLQLGIKGQMLAVAPGDDITFIVHQEQGDTTSTRYQVDL
MDGVRAIYENLTVTDEPIQHRYEKPGVYRVNVKAENSAGHDQATLYIQVTAPLQDVHLEV
VPIAGRNQEVNLTAIVLPAEANLTVFYWWIGDNLQPKLTLENSLITMFSEEGEVPVTVQA
SNGRSMVQDSKTVIVYDHFQVIPLSFSRNLDRFNPNIPEWRQDVGQVITKILAKLTGVPQ
DSLVTTVKPGLPTTADLYVLPQESTPVKRSVFVDKRVPTIKQVLSENNVSFIVRGGLRVL
VTLADSDRGSHLAAAGPGVWALAVFLLISLISAAAFILFKFKRKNYKNHGSLLRPEESSL
TRPWLRFRKLPGRNVYAQMHNEKEQEMTSPVNHSEDTQNIIQGEEFIDDDLDSQTLGNAG
GNHSGVVLSINSRELHSYLTS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcggtcatcatggcagtttcggcgcacctgtacccagctgtgtttttcgcttgc
gcgtggatgtcactgttcggaccgatttcatgtcacacaggcgttataatccagagaaac
gtacgggaccgagagtttgacagccgcggtgggcatgtcactggcagagatgaaccgctt
atctcagcgcacagccgcggagattacagcggggacccgggcggaccggccatgggagtt
ccccgagtccggagggcatcgactccggagaaagtctctctactcagcagctctttcgtc
cttaaaggggatgccacccacaaccaggcaatggtccactggacgggtgaaaatagcagc
gtcatcctcattctcaccaaatattaccatgcagactccaacaaagttcttgagagttcc
ctttggagatccagtgattatgggtcaacctacaccaaactcaacctgatgcctggcaca
accatcatagttacaaacttctacatctgtcccactaacaagaaaaaggtaatcttggtg
agctccagcatcaacgaacgtgaccagatgctcttcatcagcacagatgagggttcatcc
ttccagcggcagcctgtctccttcaccgtggatacgctcctcttccatccatctgaggaa
gacaaacttttggcttacagcaaggaggcgaagctgtatatctccaccgatctgggtcac
aaatggactctgctacaggagcgtattactaaagacagagttttctgggccgtgacgggg
gtggatgtggatcctgatttggttcatatggagattcaagacatcggtggcggatacctt
tatgtgacatgtctcatacaaaattgctctgataaaatggtgacagcacagttcttgggg
aagattgaccacaattccctctcggtgcaagatgaatacatatttgtgaaggtaactaca
ggaaatcgaaccaagtattatgtctcataccgaaggaatgaatttgttcagatgagattc
cctaaatacgcccttccaaaggatgtgcaaattgtgagtacagacgagaatcaggtattc
ttggctctgcaggagtggtatcagacagacacgtacaacctctaccagtcagatccacaa
ggtgtctattactccatcgtgttggagaacgtccgcagcacaaagcagcctgaagagaat
gtcctcatcgacatcctagaggttcgtggcatcaagggcgtattcttagccaatcaaaaa
ttagatgggaaagttatgactctcatcacctacaacaaaggcagagactgggaaccgttg
gctcctcccacaactgatatgaatggcaaacctgtcagctgcaagcagcctgactgtcac
ctccatctccacttgcgatgggctgacaacccgtacgtgtctggaacggtccacactaaa
gattctgccccaggcctcatcatgggtgcaggtaaccttgggtctcagctggttgaatat
aaagaggagatgtacatcacctcagactgtggcaagacctggagacaggtttttgaagaa
gagcatcacattctttatctggatcatggtggtgtcattgtggccattaaggacacctca
atccctttgaaaatactcaaattcagcatagatgaaggacgaacatggagcatccacaac
ttcaccagcacttctgtatttgtggatggacttctgagcgaacctggagatgagacactg
gttatgacggtatttggccacataagttaccgttcggactgggagctggtgaaggtggat
tttcgacagtcgtttcccagacagtgcacagaagctgattatgactcctggaaactcact
gacctacagggagaaaaatgcatcatgggccaggaacgaatgtacaggaggaggaaagag
tcatcattctgcattaaagggaagagctatacatcagctttaacagctaaaccatgccag
tgcacagagaaagactttgcctgtgactacggctttgagcgcgctcccagcctcaggtta
gagggggatcgctgttatcctgacttctggcatgatcctgatgctccacctgaaaactgc
cacttaggacacagctacaagtccagcacaggttaccggaaggtcatcgctaatgtatgt
gagggtggcttgaataaagaacagagtgcaaagcagcattcctgccctctgctgccccct
agaggtctgcagctgggcatcaaaggacagatgctggctgtggcacctggtgatgatatc
acctttatagtccatcaggaacagggggacaccaccagcaccagatatcaggttgattta
atggacggcgtcagggctatatatgaaaacctgactgtcacagatgaacccattcagcac
cgttatgagaagccaggtgtttaccgtgtgaatgtgaaagctgaaaactcagctggacac
gaccaagccacactttacatccaggtcacagctcctctacaagatgttcatctggaggtg
gtcccaattgctggcagaaatcaagaagtaaatctcacagctatagtgctccccgctgag
gcaaaccttaccgtgttttactggtggatcggagataaccttcagccaaagctgaccctg
gagaatagcctgattacaatgttctctgaggagggggaggttcctgtgacggttcaggct
tctaatggtcgatccatggtacaggacagcaaaactgtcattgtctatgatcatttccag
gtcatcccattgagtttcagtcgtaatttggatcgttttaacccaaacatccctgaatgg
agacaagatgttggacaagtcataaccaagattcttgctaagctcacaggggttcctcag
gactctttggttaccacggtaaaacctggtcttcccactactgcagacctgtatgttctt
cctcaagagagcacaccagtgaagaggagtgtgtttgtggataagcgtgttcccaccata
aagcaggttctgagtgagaacaatgtgagcttcattgtgagaggagggttaagagtacta
gtgactctggcagactcagatagaggttctcatttggctgcagcaggtccaggtgtttgg
gctttagctgtatttctcctcatcagtctgatctctgctgcagcattcatactcttcaag
tttaaaaggaaaaactacaaaaaccatggttccttgctgaggccagaggagagcagccta
acgcgtccctggctgcgtttcagaaaattgccgggacgaaacgtctacgcccagatgcac
aatgagaaggagcaggaaatgaccagccctgtcaatcacagtgaggacacgcagaatatc
attcaaggcgaggagttcattgatgatgacctggactcgcagacactaggtaacgccgga
ggcaaccactcaggggtggtgttgagcataaattcaagggagctgcacagttacctgacc
agctga
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